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启动子甲基化导致胃癌中 HIC1 的下调模式、其分子特征及其下游功能途径。

The promoter methylation drives down-regulation mode of HIC1 in gastric cancer, its molecular characteristics and downstream functional pathways.

机构信息

Scientific Research Centre, The Second Affiliated Hospital of Harbin Medical University, Harbin 150081, China.

Key Laboratory of Preservation of Human Genetic Resources and Disease Control in China Harbin Medical University, Ministry of Education, Harbin 150081, China.

出版信息

Gene. 2022 May 25;824:146380. doi: 10.1016/j.gene.2022.146380. Epub 2022 Mar 8.

Abstract

Gastric cancer is a common malignant tumor of the gastrointestinal tract with a high incidence and mortality rate. Previous results have suggested that the HIC1 gene might be a tumor suppressor candidate in gastric cancer. However, several critical points need to be elucidated: (1) The correlation of HIC1 promoter methylation with its specific expression level in gastric cancer; (2) The molecular characterization of HIC1 promoter methylation; (3) The possible mechanism by which HIC1 performs its inhibitory role in gastric cancer. To address these questions, we retrieved data from TCGA database to analyze HIC1 promoter methylation levels and transcript expression data, and performed targeted region bisulfite sequencing on three stable HIC1 down-regulated cell lines and normal control cell lines, and performed whole transcriptome and metabolite assays in HIC1 knockout cell lines by CRISPR-Cas9 technique. Results demonstrated that HIC1 promoter hypermethylation might be a crucial driving force leading to its down-regulation in HIC1 expression in gastric cancer. This implicated that promoter CG methylation of HIC1 might play a major role in the development of gastric carcinogenesis. Besides, HIC1 may suppress gastric cancer progression by maintaining the normal cellular metabolism, and inhibiting the mTOR signaling pathway activity.

摘要

胃癌是一种常见的消化道恶性肿瘤,具有较高的发病率和死亡率。先前的研究结果表明,HIC1 基因可能是胃癌的候选肿瘤抑制基因。然而,仍有几个关键问题需要阐明:(1)HIC1 启动子甲基化与其在胃癌中的特定表达水平之间的相关性;(2)HIC1 启动子甲基化的分子特征;(3)HIC1 在胃癌中发挥抑制作用的可能机制。为了解决这些问题,我们从 TCGA 数据库中检索数据,分析 HIC1 启动子甲基化水平和转录表达数据,并对三个稳定下调 HIC1 的细胞系和正常对照细胞系进行靶向区域亚硫酸氢盐测序,同时通过 CRISPR-Cas9 技术在 HIC1 敲除细胞系中进行全转录组和代谢物检测。结果表明,HIC1 启动子高甲基化可能是导致胃癌中 HIC1 表达下调的关键驱动力。这表明 HIC1 启动子 CG 甲基化可能在胃癌发生发展中起主要作用。此外,HIC1 可能通过维持正常的细胞代谢和抑制 mTOR 信号通路活性来抑制胃癌的进展。

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