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分子晶体的劈裂方法及其在室温下结晶β-D-甘露糖醇表面自由能计算中的应用。

Cleaving Method for Molecular Crystals and Its Application to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature.

作者信息

Di Pasquale Nicodemo, Davidchack Ruslan L

机构信息

School of Mathematics and Actuarial Science, University of Leicester, University Road, Leicester LE1 7RH, United Kingdom.

出版信息

J Phys Chem A. 2022 Apr 7;126(13):2134-2141. doi: 10.1021/acs.jpca.2c00604. Epub 2022 Mar 24.

Abstract

Calculation of the surface free energy (SFE) is an important application of the thermodynamic integration (TI) methodology, which was mainly employed for atomic crystals (such as Lennard-Jones or metals). In this work, we present the calculation of the SFE of a molecular crystal using the cleaving technique which we implemented in the LAMMPS molecular dynamics package. We apply this methodology to a crystal of β-d-mannitol at room temperature and report the results for two types of force fields belonging to the GROMOS family: all atoms and united atoms. The results show strong dependence on the type of force field used, highlighting the need for the development of better force fields to model the surface properties of molecular crystals. In particular, we observe that the united-atoms force field, despite its higher degree of coarse graining compared to the all-atoms force field, produces SFE results in better agreement with the experimental results from inverse gas chromatography measurements.

摘要

表面自由能(SFE)的计算是热力学积分(TI)方法的一项重要应用,该方法主要用于原子晶体(如 Lennard-Jones 晶体或金属晶体)。在本工作中,我们展示了使用在 LAMMPS 分子动力学软件包中实现的劈裂技术对分子晶体的 SFE 进行计算。我们将此方法应用于室温下的 β-D-甘露糖醇晶体,并报告了属于 GROMOS 家族的两种类型力场的结果:全原子力场和联合原子力场。结果表明,计算结果强烈依赖于所使用的力场类型,这突出了开发更好的力场以模拟分子晶体表面性质的必要性。特别是,我们观察到,尽管联合原子力场与全原子力场相比具有更高程度的粗粒化,但它产生的 SFE 结果与反相气相色谱测量的实验结果更吻合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cfc3/9007450/031fc6dd1103/jp2c00604_0001.jpg

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