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SentiMedQAer:一种基于迁移学习的生物医学问答情感感知模型。

SentiMedQAer: A Transfer Learning-Based Sentiment-Aware Model for Biomedical Question Answering.

作者信息

Zhu Xian, Chen Yuanyuan, Gu Yueming, Xiao Zhifeng

机构信息

School of Information Management, Nanjing University, Nanjing, China.

School of Health Economics and Management, Nanjing University of Chinese Medicine, Nanjing, China.

出版信息

Front Neurorobot. 2022 Mar 10;16:773329. doi: 10.3389/fnbot.2022.773329. eCollection 2022.

DOI:10.3389/fnbot.2022.773329
PMID:35360832
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8961296/
Abstract

Recent advances have witnessed a trending application of transfer learning in a broad spectrum of natural language processing (NLP) tasks, including question answering (QA). Transfer learning allows a model to inherit domain knowledge obtained from an existing model that has been sufficiently pre-trained. In the biomedical field, most QA datasets are limited by insufficient training examples and the presence of factoid questions. This study proposes a transfer learning-based sentiment-aware model, named SentiMedQAer, for biomedical QA. The proposed method consists of a learning pipeline that utilizes BioBERT to encode text tokens with contextual and domain-specific embeddings, fine-tunes Text-to-Text Transfer Transformer (T5), and RoBERTa models to integrate sentiment information into the model, and trains an XGBoost classifier to output a confidence score to determine the final answer to the question. We validate SentiMedQAer on PubMedQA, a biomedical QA dataset with reasoning-required yes/no questions. Results show that our method outperforms the SOTA by 15.83% and a single human annotator by 5.91%.

摘要

最近的进展表明,迁移学习在包括问答(QA)在内的广泛自然语言处理(NLP)任务中得到了越来越多的应用。迁移学习允许模型继承从经过充分预训练的现有模型中获得的领域知识。在生物医学领域,大多数QA数据集受到训练示例不足和事实性问题存在的限制。本研究提出了一种基于迁移学习的情感感知模型,名为SentiMedQAer,用于生物医学QA。所提出的方法包括一个学习管道,该管道利用BioBERT对具有上下文和特定领域嵌入的文本令牌进行编码,对文本到文本迁移变换器(T5)和RoBERTa模型进行微调,以将情感信息集成到模型中,并训练一个XGBoost分类器输出置信度分数,以确定问题的最终答案。我们在PubMedQA上验证了SentiMedQAer,这是一个具有需要推理的是非问题的生物医学QA数据集。结果表明,我们的方法比当前最优方法高出15.83%,比单个人类注释者高出5.91%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd85/8961296/4ab7a3b7a960/fnbot-16-773329-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd85/8961296/ea1407989804/fnbot-16-773329-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd85/8961296/4ab7a3b7a960/fnbot-16-773329-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd85/8961296/ea1407989804/fnbot-16-773329-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd85/8961296/4ab7a3b7a960/fnbot-16-773329-g0002.jpg

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本文引用的文献

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EBM+: Advancing Evidence-Based Medicine via two level automatic identification of Populations, Interventions, Outcomes in medical literature.EBM+:通过在医学文献中对人群、干预措施和结局进行两级自动识别,推进循证医学。
Artif Intell Med. 2020 Aug;108:101949. doi: 10.1016/j.artmed.2020.101949. Epub 2020 Aug 13.
2
BioBERT: a pre-trained biomedical language representation model for biomedical text mining.BioBERT:一种用于生物医学文本挖掘的预训练生物医学语言表示模型。
Bioinformatics. 2020 Feb 15;36(4):1234-1240. doi: 10.1093/bioinformatics/btz682.
3
A Pilot Study of Biomedical Text Comprehension using an Attention-Based Deep Neural Reader: Design and Experimental Analysis.
一项使用基于注意力的深度神经阅读器进行生物医学文本理解的初步研究:设计与实验分析。
JMIR Med Inform. 2018 Jan 5;6(1):e2. doi: 10.2196/medinform.8751.
4
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.BIOASQ大规模生物医学语义索引与问答竞赛概述。
BMC Bioinformatics. 2015 Apr 30;16:138. doi: 10.1186/s12859-015-0564-6.
5
Biomedical question answering: a survey.生物医学问答:综述。
Comput Methods Programs Biomed. 2010 Jul;99(1):1-24. doi: 10.1016/j.cmpb.2009.10.003. Epub 2009 Nov 13.
6
Factors associated with success in searching MEDLINE and applying evidence to answer clinical questions.与成功检索医学文献数据库(MEDLINE)以及应用证据回答临床问题相关的因素。
J Am Med Inform Assoc. 2002 May-Jun;9(3):283-93. doi: 10.1197/jamia.m0996.