Schein Catherine H, Negi Surendra S, Braun Werner
Department of Biochemistry and Molecular Biology, Institute for Human Infections and Immunity, University of Texas Medical Branch at Galveston, Galveston, TX, United States.
Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch at Galveston, Galveston, TX, United States.
Front Allergy. 2022 Mar 22;3:863172. doi: 10.3389/falgy.2022.863172. eCollection 2022.
The introduction of plant extracts to mitigate the symptoms of "hay fever", about a century ago, led to discoveries beginning sixty years ago on determining the sequences and eventually structures of allergenic proteins. As more proteins were cloned, there was a need to rapidly identify and categorize those with significant similarity to known allergens. The Structural Database of Allergenic Proteins (SDAP) was created at the beginning of the 21st century as the first cross-referenced website to allow rapid overview of the structures and sequences of allergenic proteins. SDAP provides a way to identify sequence and functional similarities between these proteins, despite the complex nomenclature system based on the Latin names of their different sources. A rapid FASTA search simplifies grouping allergens from the same structural or functional family. SDAP also provides an overview of the rapidly expanding literature on the sequence, structure and epitopes of allergenic proteins and a way to estimate the potential allergenicity of novel proteins based on rules provided by the IUIS. Twenty years and a pandemic later, the list of allergenic proteins and their attributes continues to grow. SDAP is expanding and improving to allow rapid access to all this information.
大约一个世纪前,引入植物提取物来缓解“花粉症”症状,这导致了从六十年前开始在确定致敏蛋白的序列并最终确定其结构方面的一系列发现。随着越来越多的蛋白质被克隆,有必要快速识别和分类那些与已知过敏原具有显著相似性的蛋白质。致敏蛋白结构数据库(SDAP)在21世纪初创建,是第一个交叉引用的网站,用于快速概览致敏蛋白的结构和序列。SDAP提供了一种方法来识别这些蛋白质之间的序列和功能相似性,尽管基于其不同来源的拉丁名称有复杂的命名系统。快速的FASTA搜索简化了来自相同结构或功能家族的过敏原分组。SDAP还概述了关于致敏蛋白的序列、结构和表位的迅速扩展的文献,并提供了一种根据国际免疫学会(IUIS)提供的规则来估计新蛋白质潜在致敏性的方法。二十年后,一场大流行之后,致敏蛋白及其属性的清单仍在不断增加。SDAP正在扩展和改进,以便快速获取所有这些信息。