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E3 连接酶配体化学:从构建模块到蛋白质降解剂

E3 ligase ligand chemistries: from building blocks to protein degraders.

作者信息

Sosič Izidor, Bricelj Aleša, Steinebach Christian

机构信息

Faculty of Pharmacy, University of Ljubljana, SI-1000 Ljubljana, Slovenia.

Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, An der Immenburg 4, D-53121 Bonn, Germany.

出版信息

Chem Soc Rev. 2022 May 10;51(9):3487-3534. doi: 10.1039/d2cs00148a.

Abstract

In recent years, proteolysis-targeting chimeras (PROTACs), capable of achieving targeted protein degradation, have proven their great therapeutic potential and usefulness as molecular biology tools. These heterobifunctional compounds are comprised of a protein-targeting ligand, an appropriate linker, and a ligand binding to the E3 ligase of choice. A successful PROTAC induces the formation of a ternary complex, leading to the E3 ligase-mediated ubiquitination of the targeted protein and its proteasomal degradation. In over 20 years since the concept was first demonstrated, the field has grown substantially, mainly due to the advancements in the discovery of non-peptidic E3 ligase ligands. Development of small-molecule E3 binders with favourable physicochemical profiles aided the design of PROTACs, which are known for breaking the rules of established guidelines for discovering small molecules. Synthetic accessibility of the ligands and numerous successful applications led to the prevalent use of cereblon and von Hippel-Lindau as the hijacked E3 ligase. However, the pool of over 600 human E3 ligases is full of untapped potential, which is why expanding the artillery of E3 ligands could contribute to broadening the scope of targeted protein degradation. In this comprehensive review, we focus on the chemistry aspect of the PROTAC design process by providing an overview of liganded E3 ligases, their chemistries, appropriate derivatisation, and synthetic approaches towards their incorporation into heterobifunctional degraders. By covering syntheses of both established and underexploited E3 ligases, this review can serve as a chemistry blueprint for PROTAC researchers during their future ventures into the complex field of targeted protein degradation.

摘要

近年来,能够实现靶向蛋白质降解的蛋白酶靶向嵌合体(PROTAC)已证明其作为分子生物学工具具有巨大的治疗潜力和实用性。这些异双功能化合物由蛋白质靶向配体、合适的连接子和与所选E3连接酶结合的配体组成。成功的PROTAC会诱导三元复合物的形成,导致E3连接酶介导的靶向蛋白质泛素化及其蛋白酶体降解。自该概念首次被证明以来的20多年里,该领域有了显著发展,这主要归功于非肽类E3连接酶配体发现方面的进展。具有良好物理化学性质的小分子E3结合剂的开发有助于PROTAC的设计,PROTAC以打破发现小分子的既定准则而闻名。配体的合成可及性和众多成功应用导致脑啡肽酶和冯·希佩尔-林道蛋白作为被劫持的E3连接酶被广泛使用。然而,超过600种人类E3连接酶的宝库充满了未开发的潜力,这就是为什么扩大E3配体的武器库有助于拓宽靶向蛋白质降解的范围。在这篇全面的综述中,我们通过概述与配体结合的E3连接酶、它们的化学性质、适当的衍生化以及将它们纳入异双功能降解剂的合成方法,聚焦于PROTAC设计过程的化学方面。通过涵盖已确立的和未充分利用的E3连接酶的合成,这篇综述可以作为PROTAC研究人员未来涉足复杂的靶向蛋白质降解领域时的化学蓝图。

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