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CRISPR/Cas9 基因编辑揭示了 CONSTITUTIVE TRIPLE RESPONSE 1 和 REPRESSOR OF SILENCING 1 在甜瓜果实成熟和表观遗传调控中的作用。

CRISPR/Cas9 gene editing uncovers the roles of CONSTITUTIVE TRIPLE RESPONSE 1 and REPRESSOR OF SILENCING 1 in melon fruit ripening and epigenetic regulation.

机构信息

Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB, 08193 Bellaterra, Barcelona, Spain.

Institut de Biologie de l'Ecole Normale Supérieure, Paris, France.

出版信息

J Exp Bot. 2022 Jun 24;73(12):4022-4033. doi: 10.1093/jxb/erac148.

Abstract

Melon (Cucumis melo) has emerged as an alternative model to tomato for studying fruit ripening due to the coexistence of climacteric and non-climacteric varieties. Previous characterization of a major quantitative trait locus (QTL), ETHQV8.1, that is able to trigger climacteric ripening in a non-climacteric background resulted in the identification of a negative regulator of ripening CTR1-like (MELO3C024518) and a putative DNA demethylase ROS1 (MELO3C024516) that is the orthologue of DML2, a DNA demethylase that regulates fruit ripening in tomato. To understand the role of these genes in climacteric ripening, in this study we generated homozygous CRISPR knockout mutants of CTR1-like and ROS1 in a climacteric genetic background. The climacteric behavior was altered in both loss-of-function mutants in two growing seasons with an earlier ethylene production profile being observed compared to the climacteric wild type, suggesting a role of both genes in climacteric ripening in melon. Single-cytosine methylome analyses of the ROS1-knockout mutant revealed changes in DNA methylation in the promoter regions of the key ripening genes such as ACS1, ETR1, and ACO1, and in transcription factors associated with ripening including NAC-NOR, RIN, and CNR, suggesting the importance of ROS1-mediated DNA demethylation for triggering fruit ripening in melon.

摘要

甜瓜(Cucumis melo)由于存在呼吸跃变型和非呼吸跃变型品种,成为研究果实成熟的替代模式植物。先前对主要数量性状位点(QTL)ETHQV8.1 的特征描述,该位点能够在非呼吸跃变型背景下触发呼吸跃变型成熟,导致鉴定出一个成熟负调控因子 CTR1-like(MELO3C024518)和一个假定的 DNA 去甲基化酶 ROS1(MELO3C024516),它是 DML2 的同源物,DML2 是一种在番茄中调节果实成熟的 DNA 去甲基化酶。为了了解这些基因在呼吸跃变型成熟中的作用,本研究在呼吸跃变型遗传背景下,生成了 CTR1-like 和 ROS1 的纯合 CRISPR 敲除突变体。在两个生长季节中,这两个功能丧失突变体的呼吸跃变型行为都发生了改变,与呼吸跃变型野生型相比,乙烯生成曲线更早,这表明这两个基因在甜瓜的呼吸跃变型成熟中起作用。ROS1 敲除突变体的单胞嘧啶甲基组分析显示,关键成熟基因如 ACS1、ETR1 和 ACO1 的启动子区域以及与成熟相关的转录因子如 NAC-NOR、RIN 和 CNR 的 DNA 甲基化发生了变化,这表明 ROS1 介导的 DNA 去甲基化对触发甜瓜果实成熟很重要。

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