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椎间盘退变中的氧化应激:生物信息策略的新见解。

Oxidative Stress in Intervertebral Disc Degeneration: New Insights from Bioinformatic Strategies.

机构信息

Department of Orthopaedics, Peking University Third Hospital, Beijing, China.

Beijing Key Laboratory of Spinal Disease Research, Beijing, China.

出版信息

Oxid Med Cell Longev. 2022 Mar 31;2022:2239770. doi: 10.1155/2022/2239770. eCollection 2022.

DOI:10.1155/2022/2239770
PMID:35401932
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8991415/
Abstract

Oxidative stress has been proved to play important roles in the development of intervertebral disc degeneration (IDD); however, the underlying mechanism remains obscure to date. The aim of this study was to elucidate the vital roles of oxidative stress-related genes in the development of IDD using strict bioinformatic algorithms. The microarray data relevant to the IDD was downloaded from Gene Expression Omnibus database for further analysis. A series of bioinformatic strategies were used to determine the oxidative stress-related and IDD-related genes (OSIDDRGs), perform the function enrichment analysis and protein-protein interaction analysis, construct the lncRNA-miRNA-mRNA regulatory network, and investigate the potential relationship of oxidative stress to immunity abnormality and autophagy in IDD. We observed a significantly different status of oxidative stress between normal intervertebral disc tissues and IDD tissues. A total of 72 OSIDDRGs were screened out for the further function enrichment analysis, and 10 hub OSIDDRGs were selected to construct the lncRNA-miRNA-mRNA regulatory network. There was a very close association of oxidative stress with immunity abnormality and autophagy in IDD. Taken together, our findings can provide new insights into the mechanism research of oxidative stress in the development of IDD and offer new potential targets for the treatment strategies.

摘要

氧化应激在椎间盘退行性变(IDD)的发生发展中起着重要作用,但目前其潜在机制尚不清楚。本研究旨在应用严格的生物信息学算法阐明与氧化应激相关的基因在 IDD 发生发展中的关键作用。从基因表达综合数据库中下载与 IDD 相关的微阵列数据进行进一步分析。利用一系列生物信息学策略确定与氧化应激相关和 IDD 相关的基因(OSIDDRGs),进行功能富集分析和蛋白质-蛋白质相互作用分析,构建 lncRNA-miRNA-mRNA 调控网络,并探讨氧化应激与 IDD 中免疫异常和自噬的潜在关系。我们观察到正常椎间盘组织和 IDD 组织之间氧化应激的状态存在显著差异。筛选出 72 个 OSIDDRGs 进行进一步的功能富集分析,并选择 10 个关键 OSIDDRGs 构建 lncRNA-miRNA-mRNA 调控网络。IDD 中氧化应激与免疫异常和自噬密切相关。综上所述,我们的研究结果可为氧化应激在 IDD 发生发展中的机制研究提供新的见解,并为治疗策略提供新的潜在靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55d3/8991415/95def46025b9/OMCL2022-2239770.007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55d3/8991415/95def46025b9/OMCL2022-2239770.007.jpg

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