Li Yongzhe, Ji Hang, Gao Xin
Department of Neurosurgery, Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Translational Medicine Research and Cooperation Center of Northern China, Heilongjiang Academy of Medical Sciences, Harbin, China.
Front Med (Lausanne). 2022 Apr 15;9:846847. doi: 10.3389/fmed.2022.846847. eCollection 2022.
Gliomas represent the most common and aggressive brain malignancy. Interferon-gamma (IFNG) is a potent inducer of immune response, developing IFNG-related gene signature may promote the diagnosis and treatment of this disease.
Bulk tumor and single-cell mRNA-seq datasets of glioma ranging from WHO grade II to IV with corresponding demographics were included. Multiple bioinformatics and machine learning algorithms were performed to develop an IFNG-related prognostic signature and evaluate immune checkpoint blockade (ICB) therapy response.
IFNGR1 and IFNGR2 were used as concise IFNG-related gene signature based on which the IFNGR score well-characterized the IFNG response in the glioma microenvironment. Increased IFNGR score was associated with clinicopathological parameters relating to tumor malignancy and prevailing molecular pathological markers. Notably, K-M and Cox regression analysis found that the IFNGR score was an effective prognostic biomarker, and was associated with tumor relapse for a subset of patients. Notably, IFNGR1 and IFNGR2 were preferentially expressed by the Mono/Macro cells in the glioma microenvironment and were significantly correlated with M2 macrophage. Thus, the IFNGR score-high group had increased expression of immune checkpoints and had the potential to predict ICB responsiveness.
In conclusion, we have developed a concise IFNG-related gene signature of clinical significance, which may improve the current diagnosis and treatment of glioma.
胶质瘤是最常见且侵袭性最强的脑恶性肿瘤。干扰素-γ(IFNG)是免疫反应的强效诱导剂,开发与IFNG相关的基因特征可能会促进该疾病的诊断和治疗。
纳入了世界卫生组织(WHO)二级至四级胶质瘤的肿瘤组织和单细胞mRNA测序数据集以及相应的人口统计学数据。运用多种生物信息学和机器学习算法来开发与IFNG相关的预后特征,并评估免疫检查点阻断(ICB)治疗反应。
IFNGR1和IFNGR2被用作简洁的与IFNG相关的基因特征,基于此IFNGR评分很好地表征了胶质瘤微环境中的IFNG反应。IFNGR评分升高与肿瘤恶性程度及主要分子病理标志物相关的临床病理参数有关。值得注意的是,K-M和Cox回归分析发现,IFNGR评分是一种有效的预后生物标志物,并且与一部分患者的肿瘤复发相关。值得注意的是,IFNGR1和IFNGR2在胶质瘤微环境中的单核/巨噬细胞中优先表达,并且与M2巨噬细胞显著相关。因此,IFNGR评分高的组免疫检查点表达增加,并且有可能预测ICB反应性。
总之,我们开发了一种具有临床意义的简洁的与IFNG相关的基因特征,这可能会改善目前胶质瘤的诊断和治疗。