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基于一级、β-二级和多重重原子动力学同位素效应的AMP核苷酶的催化和变构机制

Catalytic and allosteric mechanism of AMP nucleosidase from primary, beta-secondary, and multiple heavy atom kinetic isotope effects.

作者信息

Parkin D W, Schramm V L

出版信息

Biochemistry. 1987 Feb 10;26(3):913-20. doi: 10.1021/bi00377a036.

Abstract

Adenosine 5'-phosphate was synthesized with specific heavy atom substitutions to permit measurement of V/K kinetic isotope effects for the N-glycohydrolase activity of the allosteric AMP nucleosidase and the acid-catalyzed solvolysis of these compounds. The effects of allosteric activation on the kinetic isotope effects together with the kinetic mechanism of AMP nucleosidase [DeWolf, W. E., Jr., Emig, F. A., & Schramm, V. L. (1986) Biochemistry 25, 4132-4140] indicate that the kinetic isotope effects are fully expressed. Comparison of individual primary and secondary kinetic isotope effects with combined isotope effects and the isotope effect of the reverse reaction indicated that kinetic isotope effects in AMP nucleosidase arise from a single step in the reaction mechanism. Under these conditions, kinetic isotope effects can be used to interpret transition-state structure for AMP nucleosidase. Changes in kinetic isotope effects occurred as a function of allosteric activator, demonstrating that allosteric activation alters transition-state structure for AMP nucleosidase. Kinetic isotope effects, expressed as [V/K(normal isotope]/[V/K(heavy isotope)], were observed with [2'-2H]AMP (1.061 +/- 0.002), [9-15N]AMP (1.030 +/- 0.003), [1'-2H]AMP (1.045 +/- 0.002), and [1'-14C]AMP (1.035 +/- 0.002) when hydrolyzed by AMP nucleosidase in the absence of MgATP. Addition of MgATP altered the [2'-2H]AMP effect (1.043 +/- 0.002) and the [1'-2H]AMP effect (1.030 +/- 0.003) and caused a smaller decrease of the 14C and 15N effects. Multiple heavy atom substitutions into AMP caused an increase in observed isotope effects to 1.084 +/- 0.004 for [1'-2H,1'-14C]AMP and to 1.058 +/- 0.002 for [9-15N,1'-14C]AMP with the enzyme in the absence of ATP.(ABSTRACT TRUNCATED AT 250 WORDS)

摘要

合成了具有特定重原子取代的5'-磷酸腺苷,以测定变构AMP核苷酶N-糖苷水解酶活性以及这些化合物酸催化溶剂解的V/K动力学同位素效应。变构激活对动力学同位素效应的影响以及AMP核苷酶的动力学机制[DeWolf, W. E., Jr., Emig, F. A., & Schramm, V. L. (1986) Biochemistry 25, 4132 - 4140]表明动力学同位素效应得到了充分表达。将单个一级和二级动力学同位素效应与组合同位素效应以及逆反应的同位素效应进行比较,表明AMP核苷酶中的动力学同位素效应源于反应机制中的单个步骤。在这些条件下,动力学同位素效应可用于解释AMP核苷酶的过渡态结构。动力学同位素效应的变化随变构激活剂而变化,表明变构激活改变了AMP核苷酶的过渡态结构。在无MgATP时,用AMP核苷酶水解[2'-2H]AMP(1.061±0.002)、[9-15N]AMP(1.030±0.003)、[1'-2H]AMP(1.045±0.002)和[1'-14C]AMP(1.035±0.002)时,观察到动力学同位素效应,以[V/K(正常同位素)]/[V/K(重同位素)]表示。添加MgATP改变了[2'-2H]AMP效应(1.043±0.002)和[1'-2H]AMP效应(1.030±0.003),并使14C和15N效应有较小程度的降低。在无ATP时,对AMP进行多个重原子取代,使[1'-2H,1'-14C]AMP的观察到的同位素效应增加到1.084±0.004,[9-15N,1'-14C]AMP增加到1.058±0.002。(摘要截短于250字)

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