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通过综合生物信息学分析探讨华蟾素注射液对肝癌的作用机制

Examining the Mechanisms of Huachansu Injection on Liver Cancer through Integrated Bioinformatics Analysis.

作者信息

Huang Chao-Yuan, Cheng Yi-Min, Li Wei, Huang Yuan-Cheng, Luo Hu, Zhong Chong, Liu Feng-Bin

机构信息

The First Clinical Medical School, Guangzhou University of Chinese Medicine, Guangzhou, China.

Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China.

出版信息

Recent Pat Anticancer Drug Discov. 2023;18(3):408-425. doi: 10.2174/1574892817666220511162046.

Abstract

OBJECTIVE

The objective of this study is to explore the potential anti-liver cancer mechanism of Huachansu injection through integrated bioinformatics analysis.

METHODS

Active ingredients of Huachansu injection (extraction of toad skin) were obtained, and their potential drug targets were predicted via SwissTargetPrediction database. Liver cancer disease targets were identified from the GEO (Gene Expression Omnibus) dataset and four public databases. Then Protein-Protein Interaction (PPI) network of toad skin was constructed. GO (Gene Ontology) enrichment analysis and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analysis were performed subsequently. Finally, molecular docking was performed using Auto Dock Vina.

RESULTS

In the search for therapeutic targets, twenty active components of toad skin were screened for further study, five hundred and sixty-eight targets of components were identified. In the search for disease targets, three thousand two hundred and twenty-seven genes were identified after removal of duplicated genes, one hundred and fifty-nine genes were up-regulated in liver cancer samples while two hundred and seventy-eight were down-regulated in liver cancer patients. After predicting the therapeutic targets of the components, the results were cross-checked with the disease targets, thirteen up-regulated targets and ten down-regulated targets were obtained. Finally, in the results of molecular docking, seven targets (CDK1, AKR1B1, MMP12, AURKB, CHEK1, AURKA, TTK) were potential up-regulated targets, three targets (SHBG, SRD5A2, NR1I2) were potential down-regulated targets, all of which have the best binding energy and molecular interactions.

CONCLUSION

CDK1, AKR1B1, MMP12, AURKB, CHEK1, AURKA, and TTK could be potential upregulated target proteins of Huachansu injection for treating liver cancer. The mechanism of Huachansu injection in the treatment of liver cancer through these up-regulated targets is related to cell cycle, cellular senescence, viral carcinogenesis, p53 signaling pathway. SHBG, SRD5A2, and NR1I2 could be potential down-regulated target proteins of Huachansu injection in treating liver cancer.

摘要

目的

本研究旨在通过综合生物信息学分析探讨华蟾素注射液潜在的抗肝癌机制。

方法

获取华蟾素注射液(蟾蜍皮提取物)的活性成分,并通过瑞士药物靶点预测数据库预测其潜在的药物靶点。从基因表达综合数据库(GEO)数据集和四个公共数据库中确定肝癌疾病靶点。然后构建蟾蜍皮的蛋白质-蛋白质相互作用(PPI)网络。随后进行基因本体(GO)富集分析和京都基因与基因组百科全书(KEGG)富集分析。最后使用自动对接软件Auto Dock Vina进行分子对接。

结果

在寻找治疗靶点时,筛选出蟾蜍皮的20种活性成分进行进一步研究,确定了成分的568个靶点。在寻找疾病靶点时,去除重复基因后鉴定出3227个基因,其中159个基因在肝癌样本中上调,278个基因在肝癌患者中下调。在预测成分的治疗靶点后,将结果与疾病靶点进行交叉核对,获得13个上调靶点和10个下调靶点。最后,在分子对接结果中,7个靶点(细胞周期蛋白依赖性激酶1、醛糖还原酶1B1、基质金属蛋白酶12、极光激酶B、细胞周期检查点激酶1、极光激酶A、丝氨酸/苏氨酸蛋白激酶TTK)为潜在上调靶点,3个靶点(性激素结合球蛋白、5α-还原酶2、核受体亚家族1I组成员2)为潜在下调靶点,它们均具有最佳的结合能和分子相互作用。

结论

细胞周期蛋白依赖性激酶1、醛糖还原酶1B1、基质金属蛋白酶12、极光激酶B、细胞周期检查点激酶1、极光激酶A和丝氨酸/苏氨酸蛋白激酶TTK可能是华蟾素注射液治疗肝癌的潜在上调靶蛋白。华蟾素注射液通过这些上调靶点治疗肝癌的机制与细胞周期、细胞衰老、病毒致癌作用、p53信号通路有关。性激素结合球蛋白、5α-还原酶2和核受体亚家族1I组成员2可能是华蟾素注射液治疗肝癌的潜在下调靶蛋白。

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