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糖尿病心肌梗死中 mRNA 和 lncRNA 的 ceRNA 串扰。

The ceRNA Crosstalk between mRNAs and lncRNAs in Diabetes Myocardial Infarction.

机构信息

Department of Clinical Laboratory, China-Japan Friendship Hospital, Beijing 100029, China.

出版信息

Dis Markers. 2022 May 9;2022:4283534. doi: 10.1155/2022/4283534. eCollection 2022.

Abstract

Competitive endogenous RNA regulation suggests an intricate network of all transcriptional RNAs that have the function of repressing miRNA function and regulating mRNA expression. Today, the specific ceRNA regulatory mechanisms of lncRNA-miRNA-mRNA in patients who have diabetes mellitus (DM) and myocardial infarction (MI) are still unknown. Two data sets, GSE34198 and GSE112690, were rooted in the Gene Expression Omnibus database to search for changes of lncRNA, miRNA, and mRNA in MI patients with diabetes. Weighted gene correlation network analysis (WGCNA) was used to identify the modules related to the development of diabetes in patients with MI. Target genes of miRNAs were predicted using miRWalk, TargetScan, mirDB, RNA22, and miRanda. Then, functional and enrichment analyses were performed to build the lncRNA-miRNA-mRNA interaction network. We built ceRNA regulatory networks with three lncRNAs, two miRNAs, and nine mRNAs. Differentially expressed genes enriched in biological process, including neutrophil activation, refer to immune response and positive system of defense feedback. Besides, there is significant enrichment in molecular function of calcium toll-like receptor binding, icosanoid binding, RAGE receptor binding, and arachidonic acid binding. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis enriched differentially expressed genes (DEGs) in pathways that were well known in MI, indicating inflammation and immune response. Pathways associated with diabetes were also significantly enriched. We confirmed significantly altered lncRNA, miRNA, and mRNA in MI patients with diabetes, which might serve as biomarkers for the progress and development of diabetic cardiovascular diseases. We constructed a ceRNA regulatory network of lncRNA-miRNA-mRNA, which will enable us to understand the novel molecular mechanisms included in the initiation, progression, and interaction between DM and MI, laying the foundation for clinical diagnosis and treatment.

摘要

竞争性内源性 RNA 调控提示所有转录 RNA 之间存在复杂的网络,这些 RNA 具有抑制 miRNA 功能和调节 mRNA 表达的功能。如今,糖尿病(DM)和心肌梗死(MI)患者中 lncRNA-miRNA-mRNA 的特定 ceRNA 调控机制仍不清楚。两个数据集 GSE34198 和 GSE112690 源自基因表达综合数据库,用于搜索 MI 合并糖尿病患者中 lncRNA、miRNA 和 mRNA 的变化。加权基因相关网络分析(WGCNA)用于识别与 MI 患者糖尿病发展相关的模块。使用 miRWalk、TargetScan、mirDB、RNA22 和 miRanda 预测 miRNA 的靶基因。然后,进行功能和富集分析以构建 lncRNA-miRNA-mRNA 相互作用网络。我们构建了三个 lncRNA、两个 miRNA 和九个 mRNA 的 ceRNA 调控网络。差异表达基因在生物学过程中富集,包括中性粒细胞激活,这涉及免疫反应和防御反馈的正系统。此外,在分子功能上,钙 Toll 样受体结合、icosanoid 结合、RAGE 受体结合和花生四烯酸结合也有显著富集。京都基因与基因组百科全书(KEGG)分析富集了 MI 中已知的差异表达基因(DEGs)通路,表明存在炎症和免疫反应。与糖尿病相关的通路也显著富集。我们证实了 MI 合并糖尿病患者中 lncRNA、miRNA 和 mRNA 明显改变,这可能作为糖尿病心血管疾病进展和发展的生物标志物。我们构建了 lncRNA-miRNA-mRNA 的 ceRNA 调控网络,这将使我们能够理解 DM 和 MI 之间的启动、进展和相互作用中包含的新分子机制,为临床诊断和治疗奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8197/9112177/1913ae87cce3/DM2022-4283534.001.jpg

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