Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.
Alpha Mol Science Ltd, Shenzhen 518055, China.
J Chem Inf Model. 2022 Jun 27;62(12):3090-3095. doi: 10.1021/acs.jcim.2c00170. Epub 2022 Jun 13.
The allosteric modulation of G-protein-coupled receptors (GPCRs) by sodium ions has received significant attention as the crystal structures of several receptors show the binding of sodium ions (Na) at the conserved D. Theoretical studies have shown that extracellular Na would enter the allosteric D via the orthosteric site. However, it remains unclear how the bound allosteric Na would leave the GPCRs. In this study, we performed molecular dynamics (MD) simulations to illustrate the energy barriers of Na transfer through the transmembrane helix bundle of βAR. In contrast to the postulations from other GPCRs, the translocation of this allosteric Na into the intracellular side is found to be significantly difficult. Hence, the translocation direction could be receptor-specific.
G 蛋白偶联受体 (GPCR) 的变构调节受到钠离子的显著关注,因为几个受体的晶体结构显示钠离子 (Na) 结合在保守的 D 上。理论研究表明,细胞外 Na 将通过正位点进入变构 D。然而,目前尚不清楚结合的变构 Na 如何离开 GPCR。在这项研究中,我们进行了分子动力学 (MD) 模拟,以说明 Na 通过 βAR 的跨膜螺旋束转移的能量障碍。与其他 GPCR 的假设相反,发现这种变构 Na 易位到细胞内侧非常困难。因此,易位方向可能是受体特异性的。