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中国脑出血患者中的罕见和常见变异

Rare and Common Variants in in Chinese Patients With Intracerebral Hemorrhage.

作者信息

Liu Xiaolu, Yang Qiong, Tang Lu, He Ji, Tian Danyang, Wang Baojun, Xie Lihong, Li Changbao, Fan Dongsheng

机构信息

Department of Neurology, Peking University Third Hospital, Beijing, China.

Department of Neurology, Central Hospital of Baotou, Baotou, China.

出版信息

Front Neurol. 2022 May 27;13:827165. doi: 10.3389/fneur.2022.827165. eCollection 2022.

Abstract

Here, we screened the variants in Chinese intracerebral hemorrhage (ICH) patients to summarize the relationship between the variants and clinical characteristics. Targeted sequencing of a 65-gene panel including was performed to detect all the coding regions and ±10-bp splicing sites. In total, 568 patients were included. Regarding rare nonsynonymous variants with a minor allele frequency (MAF) <0.5%, 6 missense variants and five suspicious splice site variants, absent in 573 healthy controls, were found in 11 patients. The subgroup carrying rare variants did not show specific phenotype compared with non-variant carriers. For the single nucleotide polymorphism (SNP) loci with an MAF> 5%, we did not find a significant association between the allele or genotype distribution of the SNP loci and the risk of ICH. Rs3742207 was nominally associated with death at 1-year follow-up ( = 0.02027, OR 1.857, 95% CI 1.101-3.133) after adjusted by age, hypertension history, hematoma volume and recurrent ICH history. Nevertheless, after the Bonferroni correction, the association was no longer significant. In conclusion, rare nonsynonymous variants in were identified in 1.94% (11/568) of Chinese ICH patients, while rs3742207 maybe indicate a worse prognosis of ICH.

摘要

在此,我们对中国脑出血(ICH)患者的变异进行了筛查,以总结这些变异与临床特征之间的关系。对包括[未提及具体内容]的65个基因的基因panel进行靶向测序,以检测所有编码区和±10bp的剪接位点。总共纳入了568例患者。对于次要等位基因频率(MAF)<0.5%的罕见非同义变异,在11例患者中发现了6个错义变异和5个可疑剪接位点变异,这些变异在573名健康对照中不存在。与非变异携带者相比,携带罕见变异的亚组未表现出特定表型。对于MAF>5%的单核苷酸多态性(SNP)位点,我们未发现SNP位点的等位基因或基因型分布与ICH风险之间存在显著关联。在根据年龄、高血压病史、血肿体积和复发性ICH病史进行调整后,rs3742207在1年随访时与死亡名义上相关(P = 0.02027,OR 1.857,95%CI 1.101 - 3.133)。然而,经过Bonferroni校正后,这种关联不再显著。总之,在中国ICH患者中,1.94%(11/568)的患者中鉴定出了[未提及具体内容]中的罕见非同义变异,而rs3742207可能表明ICH的预后较差。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d44b/9196627/fda2c40b25f7/fneur-13-827165-g0001.jpg

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