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生物库架构与基因组学数据的整合:基因组学集成生物库本体(GIBO)。

Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO).

机构信息

Emerging Pathogens Institute, Food Systems Institute, Animal Sciences Department, University of Florida, Gainesville, Florida, USA.

Department of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, Florida, USA.

出版信息

Stud Health Technol Inform. 2022 Jun 29;295:302-303. doi: 10.3233/SHTI220722.

Abstract

Integration of clinical-pathological information of Biobanks with genomics-epidemiological data/inferences in a structured and consistent manner, mitigating inherent heterogeneities of sites/sources of data/sample collection, processing, and information storage hurdles, is primary to achieving an automated surveillance system. Genomics Integrated Biobanking Ontology (GIBO) presents a solution for preserving the contextual meaning of heterogeneous data, while interlinking different genomics and epidemiological concepts in machine comprehensible format with the biobank framework. GIBO an OWL ontology introduces 84 new classes to integrate genomics data relevant to public health.

摘要

以结构化和一致的方式整合生物库的临床病理信息与基因组学-流行病学数据/推论,减轻数据/样本采集、处理和信息存储来源的固有异质性障碍,是实现自动化监测系统的关键。基因组学集成生物库本体(GIBO)提供了一种解决方案,可在保留异构数据的上下文含义的同时,以机器可理解的格式将不同的基因组学和流行病学概念与生物库框架相链接。GIBO 是一个 OWL 本体,引入了 84 个新类来整合与公共卫生相关的基因组学数据。

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