Suppr超能文献

博伊斯大戟(大戟科:大戟属)的完整叶绿体基因组

Complete chloroplast genome of Boiss (Euphorbiaceae: Euphorbia).

作者信息

Wang Dan, Dan Yu-Rou, Liu Ming, Yin Fu-Qiang

机构信息

College of Biological and Food Engineering, Chongqing Three Gorges University, Chongqing, China.

The Chongqing Engineering Laboratory for Green Cultivation and Deep Processing of the Three Gorges Reservoir Area's Medicinal Herbs, Chongqing, China.

出版信息

Mitochondrial DNA B Resour. 2022 Jun 28;7(6):1129-1130. doi: 10.1080/23802359.2022.2087557. eCollection 2022.

Abstract

Boiss is a plant with high medicinal value. Yet, its molecular biology is not fully understood. In this study, we sequenced the whole chloroplast genome (CP) sequence of to study its phylogenetic relationship in Euphorbiaceae. The total length of the chloroplast genome of is 162,056 bp, including a large single-copy (LSC) region of 89,936bp bp, a small single-copy (SSC) region of 18,376 bp, and a pair of identical inverted repeat regions (IRs) of 11,367 bp. The genome has 128 genes, including 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The overall GC content of the plastome is 35.7%. The phylogenetic analysis of with 30 related species suggested a closest taxonomical relationship with in the Euphorbiaceae family.

摘要

博伊斯是一种具有很高药用价值的植物。然而,其分子生物学尚未被完全理解。在本研究中,我们对其叶绿体全基因组(CP)序列进行了测序,以研究其在大戟科中的系统发育关系。其叶绿体基因组全长162,056 bp,包括一个89,936 bp的大单拷贝(LSC)区域、一个18,376 bp的小单拷贝(SSC)区域和一对11,367 bp的相同反向重复区域(IRs)。该基因组有128个基因,包括84个蛋白质编码基因、36个转运RNA(tRNA)基因和8个核糖体RNA(rRNA)基因。质体基因组的总体GC含量为35.7%。对其与30个相关物种的系统发育分析表明,在大戟科中它与[具体物种名称未给出]的分类关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e44/9246027/4195892027bb/TMDN_A_2087557_F0001_B.jpg

相似文献

1
Complete chloroplast genome of Boiss (Euphorbiaceae: Euphorbia).
Mitochondrial DNA B Resour. 2022 Jun 28;7(6):1129-1130. doi: 10.1080/23802359.2022.2087557. eCollection 2022.
2
The complete chloroplast genome of (Euphorbiaceae), a commonly used medicinal plant in China.
Mitochondrial DNA B Resour. 2021 Jun 28;6(8):2166-2168. doi: 10.1080/23802359.2021.1945506. eCollection 2021.
3
The complete chloroplast genome of a coastal plant, (Euphorbiaceae).
Mitochondrial DNA B Resour. 2022 Apr 3;7(3):569-570. doi: 10.1080/23802359.2022.2055502. eCollection 2022.
4
The complete chloroplast genome sequence of L. (Euphorbiaceae).
Mitochondrial DNA B Resour. 2020 Nov 3;5(3):3678-3680. doi: 10.1080/23802359.2020.1832601.
5
The complete nucleotide sequence of chloroplast genome of (Euphorbiaceae), an endemic herb in China.
Mitochondrial DNA B Resour. 2018 Aug 1;3(2):831-832. doi: 10.1080/23802359.2018.1495122.
6
The complete chloroplast genome of (Euphorbiaceae).
Mitochondrial DNA B Resour. 2024 Feb 8;9(2):267-271. doi: 10.1080/23802359.2024.2313039. eCollection 2024.
7
Characterization of the complete chloroplast genome of Linn. (Euphorbiaceae), a traditional Chinese medicine.
Mitochondrial DNA B Resour. 2019 Oct 24;4(2):3770-3771. doi: 10.1080/23802359.2019.1682480.
8
The complete chloroplast genome of the L. (Euphorbiaceae): characterization and phylogeny.
Mitochondrial DNA B Resour. 2020 Nov 6;5(3):3713-3714. doi: 10.1080/23802359.2020.1833778.
9
Complete plastome sequence of Des Moul. (Euphorbiaceae).
Mitochondrial DNA B Resour. 2020 Jan 8;5(1):426-427. doi: 10.1080/23802359.2019.1703598.
10
The complete chloroplast genome of Hayata (Euphorbiaceae).
Mitochondrial DNA B Resour. 2021 Jan 19;6(1):151-153. doi: 10.1080/23802359.2020.1852904.

引用本文的文献

1
The complete chloroplast genome of (Euphorbiaceae).
Mitochondrial DNA B Resour. 2024 Feb 8;9(2):267-271. doi: 10.1080/23802359.2024.2313039. eCollection 2024.

本文引用的文献

1
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
2
CPGAVAS2, an integrated plastome sequence annotator and analyzer.
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
3
[Terpenoids from Euphorbia micractina].
Yao Xue Xue Bao. 2016 Mar;51(3):411-9.
4
GeSeq - versatile and accurate annotation of organelle genomes.
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
5
[Steroids and aromatic derivatives from Euphorbia micractina].
Zhongguo Zhong Yao Za Zhi. 2015 Dec;40(23):4639-44.
6
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs.
Mol Ecol Resour. 2014 Sep;14(5):1024-31. doi: 10.1111/1755-0998.12251. Epub 2014 Apr 7.
7
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
8
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
9
Ingenol mebutate gel 0.015% and 0.05%: in actinic keratosis.
Drugs. 2012 Dec 24;72(18):2397-405. doi: 10.2165/11470090-000000000-00000.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验