基因组解析宏基因组学揭示了来自亚马逊森林和牧场土壤的新型古菌和细菌基因组。

Genome-resolved metagenomics reveals novel archaeal and bacterial genomes from Amazonian forest and pasture soils.

机构信息

Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil.

Princeton Institute for International and Regional Studies, Princeton University, Princeton, NJ, USA.

出版信息

Microb Genom. 2022 Jul;8(7). doi: 10.1099/mgen.0.000853.

Abstract

Amazonian soil microbial communities are known to be affected by the forest-to-pasture conversion, but the identity and metabolic potential of most of their organisms remain poorly characterized. To contribute to the understanding of these communities, here we describe metagenome-assembled genomes (MAGs) recovered from 12 forest and pasture soil metagenomes of the Brazilian Eastern Amazon. We obtained 11 forest and 30 pasture MAGs (≥50% of completeness and ≤10 % of contamination), distributed among two archaeal and 11 bacterial phyla. The taxonomic classification results suggest that most MAGs may represent potential novel microbial taxa. MAGs selected for further evaluation included members of , , , , , , , , and , thus revealing their roles in carbohydrate degradation and mercury detoxification as well as in the sulphur, nitrogen, and methane cycles. A methane-producing of the genus was almost exclusively recovered from pasture soils, which can be linked to a sink-to-source shift after the forest-to-pasture conversion. The novel MAGs constitute an important resource to help us unravel the yet-unknown microbial diversity in Amazonian soils and its functional potential and, consequently, the responses of these microorganisms to land-use change.

摘要

已知亚马逊土壤微生物群落受森林到牧场转变的影响,但它们的大多数生物的身份和代谢潜力仍未得到充分描述。为了帮助理解这些群落,我们在这里描述了从巴西东部亚马逊的 12 个森林和牧场土壤宏基因组中回收的宏基因组组装基因组 (MAGs)。我们获得了 11 个森林和 30 个牧场 MAGs(完整性≥50%,污染率≤10%),分布在两个古菌门和 11 个细菌门中。分类学分类结果表明,大多数 MAGs 可能代表潜在的新型微生物类群。选择进行进一步评估的 MAGs 包括、、、、、、、和的成员,从而揭示了它们在碳水化合物降解和汞解毒以及硫、氮和甲烷循环中的作用。一个几乎只从牧场土壤中回收的产甲烷菌属的成员可以与森林到牧场转变后的源汇转变联系起来。这些新的 MAGs 是一个重要的资源,可以帮助我们揭示亚马逊土壤中未知的微生物多样性及其功能潜力,从而了解这些微生物对土地利用变化的反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c942/9455692/18d4633546ce/mgen-8-853-g001.jpg

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