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由从头设计的肽和DNA G-四链体/血红素复合物自组装而成的可切换模拟酶催化剂。

Switchable Enzyme-mimicking catalysts Self-Assembled from de novo designed peptides and DNA G-quadruplex/hemin complex.

作者信息

Teng Qiao, Wu Haifeng, Sun Hao, Liu Yuanxi, Wang Hui, Wang Zhen-Gang

机构信息

State Key Laboratory of Organic-Inorganic Composites, Key Lab of Biomedical Materials of Natural Macromolecules (Beijing University of Chemical Technology, Ministry of Education), Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China.

Laboratory of Theoretical and Computational Nanoscience, CAS Center for Excellence in Nanoscience, CAS Key Laboratory of Nanophotonic Materials and Devices, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, China.

出版信息

J Colloid Interface Sci. 2022 Dec 15;628(Pt A):1004-1011. doi: 10.1016/j.jcis.2022.08.005. Epub 2022 Aug 8.

Abstract

Reconstruction of enzymatic active site in an artificial system is key to achieving high catalytic efficiency. Herein, we report the self-assembly of the lysine-containing peptides with guanine-rich DNA and hemin to form peroxidase-mimicking active sites and catalytic nanoparticles. The DNA strand self-folds into a G-quadruplex structure that provides a supramolecular scaffold and a potential axial ligand for hemin. The β-sheet forming capability of the lysine-containing peptides is found to affect the catalytic synergy between the G-quadruplex DNA and the peptide. It is hypothesized that the β-sheet formation of the peptides results in the enrichment of the lysine residues, which distribute on the distal side of hemin to promote the formation of Compound I, like distal arginine residue in natural heme pocket. Incorporation of the histidine residues into the lysine-containing peptides further enhanced the hemin activities, indicating the cooperation between the lysine and histidine. Furthermore, the peptide/DNA/hemin complexes can be switched between active and inactive state by reversible formation and deformation of the DNA G-quadruplex, which was attributed to the peptides-promoted conformational changes of the DNA components. This work opens an avenue to mimic the catalytic residues and their spatial distribution in the natural enzymes, and shed light on the design of the smart biocatalysts that can respond to the environmental stimuli.

摘要

在人工体系中重建酶活性位点是实现高催化效率的关键。在此,我们报道了含赖氨酸的肽与富含鸟嘌呤的DNA和血红素的自组装,以形成模拟过氧化物酶的活性位点和催化纳米颗粒。DNA链自折叠成G-四链体结构,为血红素提供了一个超分子支架和一个潜在的轴向配体。发现含赖氨酸的肽形成β-折叠的能力会影响G-四链体DNA与肽之间的催化协同作用。据推测,肽的β-折叠形成导致赖氨酸残基富集,这些残基分布在血红素的远端,以促进化合物I的形成,就像天然血红素口袋中的远端精氨酸残基一样。将组氨酸残基掺入含赖氨酸的肽中进一步增强了血红素的活性,表明赖氨酸和组氨酸之间存在协同作用。此外,肽/DNA/血红素复合物可以通过DNA G-四链体的可逆形成和变形在活性和非活性状态之间切换,这归因于肽促进的DNA组分的构象变化。这项工作为模拟天然酶中的催化残基及其空间分布开辟了一条途径,并为设计能够响应环境刺激的智能生物催化剂提供了思路。

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