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用于鉴定和多样性分析引起[植物名称]叶枯病的[病原菌名称]分离株的多基因系统发育方法

Multi-Gene Phylogenetic Approach for Identification and Diversity Analysis of and Isolates Causing Foliar Blight of .

作者信息

Manzar Nazia, Kashyap Abhijeet Shankar, Maurya Avantika, Rajawat Mahendra Vikram Singh, Sharma Pawan Kumar, Srivastava Alok Kumar, Roy Manish, Saxena Anil Kumar, Singh Harsh Vardhan

机构信息

Plant Pathology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunathbhanjan 275103, India.

Molecular Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunathbhanjan 275103, India.

出版信息

J Fungi (Basel). 2022 Jul 29;8(8):802. doi: 10.3390/jof8080802.

Abstract

species are known to be important plant pathogens that commonly cause leaf spot, root rot, and seedling blight in a wide range of hosts worldwide. In 2017, complex symptomatic cases of maydis leaf blight (caused by ) and maize leaf spot (caused by ) have become increasingly significant in the main maize-growing regions of India. A total of 186 samples of maydis leaf blight and 129 maize leaf spot samples were collected, in 2017, from 20 sampling sites in the main maize-growing regions of India to explore the diversity and identity of this pathogenic causal agent. A total of 77 isolates and 74 isolates were screened based on morphological and molecular characterization and phylogenetic analysis based on ribosomal markers-nuclear ribosomal DNA (rDNA) internal transcribed spacer (ITS) region, 28S nuclear ribosomal large subunit rRNA gene (LSU), D1/D2 domain of large-subunit (LSU) ribosomal DNA (rDNA), and protein-coding gene-glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Due to a dearth of molecular data from ex-type cultures, the use of few gene regions for species resolution, and overlapping morphological features, species recognition in has proven difficult. The present study used the multi-gene phylogenetic approach for proper identification and diversity of geographically distributed . and . isolates in Indian settings and provides useful insight into and explanation of its quantitative findings.

摘要

已知某些物种是重要的植物病原体,在全球范围内的多种寄主上通常会引发叶斑病、根腐病和幼苗枯萎病。2017年,玉米大斑病(由……引起)和玉米叶斑病(由……引起)的复杂症状病例在印度主要玉米种植区变得日益显著。2017年,从印度主要玉米种植区的20个采样点共采集了186份玉米大斑病样本和129份玉米叶斑病样本,以探究这种致病病原体的多样性和特性。基于形态学和分子特征以及基于核糖体标记——核糖体DNA(rDNA)内部转录间隔区(ITS)区域、28S核糖体大亚基rRNA基因(LSU)、大亚基(LSU)核糖体DNA(rDNA)的D1/D2结构域以及蛋白质编码基因——甘油醛-3-磷酸脱氢酶(GAPDH)的系统发育分析,共筛选了77株……分离株和74株……分离株。由于来自模式菌株培养物的分子数据匮乏、用于物种鉴定的基因区域较少以及形态特征重叠,在……中进行物种识别已被证明很困难。本研究采用多基因系统发育方法对印度环境中地理分布的……和……分离株进行准确鉴定和多样性分析,并对其定量结果提供了有用的见解和解释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b930/9410300/71d219f256c2/jof-08-00802-g001.jpg

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