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两种蓝莓病原体的基因组分析:CAA958和CBS 160.32

Genome Analyses of Two Blueberry Pathogens: CAA958 and CBS 160.32.

作者信息

Hilário Sandra, Gonçalves Micael F M, Fidalgo Cátia, Tacão Marta, Alves Artur

机构信息

Centre for Environmental and Marine Studies (CESAM), Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.

出版信息

J Fungi (Basel). 2022 Jul 29;8(8):804. doi: 10.3390/jof8080804.

Abstract

The genus includes pathogenic species distributed worldwide and affecting a wide variety of hosts. and have been found to cause cankers, dieback, or twig blights on economically important crops such as soybean, almond, grapevine, and blueberry. Despite their importance as plant pathogens, the strategies of species of to infect host plants are poorly explored. To provide a genomic basis of pathogenicity, the genomes of CAA958 and CBS 160.32 were sequenced and analyzed. Cellular transporters involved in the transport of toxins, ions, sugars, effectors, and genes implicated in pathogenicity were detected in both genomes. Hydrolases and oxidoreductases were the most prevalent carbohydrate-active enzymes (CAZymes). However, analyses of the secreted proteins revealed that the secretome of CBS 160.32 is represented by 5.4% of CAZymes, whereas the secreted CAZymes repertoire of CAA958 represents 29.1% of all secretomes. Biosynthetic gene clusters (BGCs) encoding compounds related to phytotoxins and mycotoxins were detected in and genomes. The core gene clusters of the phytotoxin Fusicoccin A in are reported here through a genome-scale assembly. Comparative analyses of the genomes from 11 species revealed an average of 874 CAZymes, 101 secondary metabolite BGCs, 1640 secreted proteins per species, and genome sizes ranging from 51.5 to 63.6 Mbp. This study offers insights into the overall features and characteristics of genomes. Our findings enrich the knowledge about and , which will facilitate further research into the pathogenicity mechanisms of these species.

摘要

该属包括分布于世界各地、感染多种宿主的致病物种。已发现[具体物种1]和[具体物种2]会在大豆、杏仁、葡萄和蓝莓等经济作物上引发溃疡、枝枯或小枝枯萎病。尽管它们作为植物病原体具有重要性,但[具体物种1]和[具体物种2]感染宿主植物的策略却鲜有研究。为提供致病性的基因组基础,对[具体物种1]CAA958和[具体物种2]CBS 160.32的基因组进行了测序和分析。在两个基因组中均检测到参与毒素、离子、糖类、效应子转运的细胞转运蛋白以及与致病性相关的基因。水解酶和氧化还原酶是最普遍的碳水化合物活性酶(CAZyme)。然而,对分泌蛋白的分析表明,[具体物种2]CBS 160.32的分泌蛋白组中CAZyme占5.4%,而[具体物种1]CAA958的分泌CAZyme库占所有分泌蛋白组的29.1%。在[具体物种1]和[具体物种2]的基因组中检测到编码与植物毒素和霉菌毒素相关化合物的生物合成基因簇(BGC)。本文通过全基因组组装报道了[具体物种1]中植物毒素藤霉素A的核心基因簇。对11个[具体物种]的基因组进行比较分析发现,每个物种平均有874个CAZyme、101个次生代谢物BGC、1640个分泌蛋白,基因组大小在51.5至63.6 Mbp之间。本研究为[具体物种]基因组的整体特征提供了见解。我们的发现丰富了关于[具体物种1]和[具体物种2]的知识,这将有助于进一步研究这些物种的致病机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1773/9409727/c41cd48f1b15/jof-08-00804-g001.jpg

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