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sp. nov.,从一只患有呼吸道疾病的绵羊中分离得到。

sp. nov., isolated from a sheep with respiratory disease.

机构信息

Yunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, 650224, PR China.

Yunnan Provincial Meat Caprine Engineering Research Center, Yunnan Animal Science and Veterinary Institute, Kunming, 650224, PR China.

出版信息

Int J Syst Evol Microbiol. 2022 Sep;72(9). doi: 10.1099/ijsem.0.005511.

Abstract

A novel Gram-stain-negative, aerobic, coccus-shaped bacteria, designated ZY201115, was isolated from the nasal cavity of a sheep with respiratory disease in Yunnan Province, south-west China, and its taxonomic affiliation was studied by applying a polyphasic approach. The strain grew at 18-41 °C (optimum, 37 °C), at pH 6.0-9.0 (optimum, pH 8.0) and in 0.5-3.0% (w/v) NaCl (optimum, 1.0 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain is affiliated to the genus with highest similarity to ATCC 10900 (96.6 %). Phylogenomic analysis based on 811 single-copy genes also indicated that the strain represents a novel species in the genus and formed a deep and separated clade with NCTC 10293. The highest genomic orthologous average nucleotide identity and digital DNA-DNA hybridization values between the strain and the type strains in the genus were 73.7% ( NCTC 10293) and 25.3% ( CCUG 350), respectively. The G+C content of the complete genome sequence was 42.1 mol%. The predominant fatty acids (>5 %) were C ω9, C ω8, C3OH and summed feature 3 (C ω7 and/or C ω6). The major polar lipids were phosphatidylglycerol, cardiolipin, monolysocardiolipin, phosphatidylethanolamine and hemibismonoacylglycerophosphate. The major respiratory quinone was CoQ-8. On the basis of the results of phylogenetic, phenotypic and chemotaxonomic characterizations, strain ZY201115 clearly represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is ZY201115 (=CCTCC AB 2021473=CCUG 75922).

摘要

一株新型革兰氏阴性、需氧、球菌状细菌,被命名为 ZY201115,从中国西南部云南省一只患有呼吸道疾病的绵羊鼻腔中分离得到,采用多相分类法对其分类归属进行了研究。该菌株在 18-41°C(最适温度 37°C)、pH6.0-9.0(最适 pH8.0)和 0.5-3.0%(w/v)NaCl(最适 1.0%NaCl)中生长。基于 16S rRNA 基因序列的系统发育分析表明,该菌株属于 属,与 ATCC 10900(96.6%)最为相似。基于 811 个单拷贝基因的系统基因组分析也表明,该菌株代表了 属中的一个新种,与 NCTC 10293 形成了一个深而分离的分支。该菌株与 属的模式菌株之间的最高基因组同源平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 73.7%(NCTC 10293)和 25.3%(CCUG 350)。完整基因组序列的 G+C 含量为 42.1 mol%。优势脂肪酸(>5%)为 C ω9、C ω8、C3OH 和总和特征 3(C ω7 和/或 C ω6)。主要极性脂为磷脂酰甘油、心磷脂、单溶血磷脂酰甘油、磷脂酰乙醇胺和半双酰甘油磷酸酯。主要呼吸醌为 CoQ-8。基于系统发育、表型和化学分类特征的结果,菌株 ZY201115 清楚地代表了 属的一个新种,建议将其命名为 sp. nov.。模式菌株为 ZY201115(=CCTCC AB 2021473=CCUG 75922)。

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