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组蛋白去甲基化酶 Trim28 的瓜氨酸化修饰通过调控 Nanog 和 Klf4 的转录维持小鼠胚胎干细胞的多能性。

Trim28 citrullination maintains mouse embryonic stem cell pluripotency via regulating Nanog and Klf4 transcription.

机构信息

State Key Laboratory of Biotherapy and Cancer Center, National Clinical Research Center for Geriatrics, and Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Sichuan University, Chengdu, 610041, China.

Department of Gastrointestinal Surgery, and Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Sichuan University, Chengdu, 610041, China.

出版信息

Sci China Life Sci. 2023 Mar;66(3):545-562. doi: 10.1007/s11427-022-2167-3. Epub 2022 Sep 8.

Abstract

Protein citrullination, including histone H1 and H3 citrullination, is important for transcriptional regulation, DNA damage response, and pluripotency of embryonic stem cells (ESCs). Tripartite motif containing 28 (Trim28), an embryonic development regulator involved in ESC self-renewal, has recently been identified as a novel substrate for citrullination by Padi4. However, the physiological functions of Trim28 citrullination and its role in regulating the chromatin structure and gene transcription of ESCs remain unknown. In this paper, we show that Trim28 is specifically citrullinated in mouse ESCs (mESCs), and that the loss of Trim28 citrullination induces loss of pluripotency. Mechanistically, Trim28 citrullination enhances the interaction of Trim28 with Smarcad1 and prevents chromatin condensation. Additionally, Trim28 citrullination regulates mESC pluripotency by promoting transcription of Nanog and Klf4 which it does by increasing the enrichment of H3K27ac and H3K4me3 and decreasing the enrichment of H3K9me3 in the transcriptional regulatory region. Thus, our findings suggest that Trim28 citrullination is the key for the epigenetic activation of pluripotency genes and pluripotency maintenance of ESCs. Together, these results uncover a role Trim28 citrullination plays in pluripotency regulation and provide novel insight into how citrullination of proteins other than histones regulates chromatin compaction.

摘要

蛋白质瓜氨酸化,包括组蛋白 H1 和 H3 的瓜氨酸化,对于转录调控、DNA 损伤反应和胚胎干细胞(ESCs)的多能性至关重要。三部分结构域包含 28 个氨基酸(Trim28),是一种参与 ESC 自我更新的胚胎发育调节剂,最近被鉴定为 Padi4 催化的瓜氨酸化的新底物。然而,Trim28 瓜氨酸化的生理功能及其在调节 ESC 染色质结构和基因转录中的作用尚不清楚。在本文中,我们表明 Trim28 特异性地在小鼠胚胎干细胞(mESCs)中发生瓜氨酸化,并且 Trim28 瓜氨酸化的缺失会导致多能性丧失。从机制上讲,Trim28 瓜氨酸化增强了 Trim28 与 Smarcad1 的相互作用,并防止了染色质的浓缩。此外,Trim28 瓜氨酸化通过促进 Nanog 和 Klf4 的转录来调节 mESC 的多能性,它通过增加转录调控区域中 H3K27ac 和 H3K4me3 的富集以及降低 H3K9me3 的富集来实现这一点。因此,我们的研究结果表明,Trim28 瓜氨酸化是多能性基因的表观遗传激活和 ESC 多能性维持的关键。总之,这些结果揭示了 Trim28 瓜氨酸化在多能性调控中的作用,并为蛋白质除组蛋白外的瓜氨酸化如何调节染色质紧缩提供了新的见解。

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