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基于 Pt(IV) 配合物处理后结直肠癌细胞系 EMT 特征的 WNT/β-连环蛋白信号通路的数值建模。

Numerical modelling of WNT/β-catenin signal pathway in characterization of EMT of colorectal carcinoma cell lines after treatment with Pt(IV) complexes.

机构信息

Institute for Information Technologies, University of Kragujevac, Jovana Cvijia bb, 34 000, Kragujevac, Serbia.

Faculty of Science, University of Kragujevac, Radoja Domanovića 12, 34 000, Kragujevac, Serbia.

出版信息

Comput Methods Programs Biomed. 2022 Nov;226:107158. doi: 10.1016/j.cmpb.2022.107158. Epub 2022 Sep 25.

Abstract

BACKGROUND AND OBJECTIVE

Colorectal cancer (CRC) is at the top of the most common cancer types in the world, with significant mortality rates among both men and women. Deregulation of Wnt/β-catenin pathway and cell-cell junctions' components, acquisition of invasive phenotype, epithelial-mesenchymal transition (EMT) and invasion are important for development and progression of colorectal cancer. Numerical simulation presents method for estimation of the Wnt pathway via its individual components in cells, thus providing information about EMT, migratory and invasive potential. By using this numerical model, the effectiveness of treatment in EMT suppression can be assessed. Furthermore, the model can be adapted to ``every'' cell type, application time or duration of treatment can be also modified.

METHODS

We characterized colorectal cancer (CRC) cell lines (HCT-116, SW-480) from the aspect of EMT, via markers β-catenin and E-cadherin using numerical modeling. To confirm the numerical model, cells were treated with sublethal concentrations of platinum(IV) complexes and their ligands. We confirmed β-catenin regulated expression of mesenchymal markers: N-cadherin, Vimentin and MMP-9, and decreased E-cadherin expression. Treatment-induced changes were determined in the protein expression of tested markers and results showed cell-specific responses. Molecular docking was performed to investigate exact effects of treatments on E-cadherin and β-catenin in cell-cell junctions and individually in tested cells.

RESULTS

The application of the numerical model via β-catenin and E-cadherin (experimentally measured), is largely valid for the categorization of EMT progression in cells. This numerical modeling better characterizes cells with single cell migration, higher expression of mesenchymal markers, and advanced mesenchymal phenotype like HCT-116 cell line. The model was validated for the treatments and results show HCT-116 cells as more sensitive to applied compounds, among which ligands were more potent in reducing migration and invasiveness. Anti-migratory/invasive effects were due to increased E-cadherin, cytoplasmic β-catenin expression and suppressed mesenchymal markers. In silico methods showed higher affinity of tested chemicals towards free β-catenin, which is the key for regulation of migratory/invasive potential.

CONCLUSIONS

Our study shows that, no matter individual properties of cell lines and EMT degree, de novo formation of intercellular junctions stands in the basis of anti-migratory/invasive process.

摘要

背景与目的

结直肠癌(CRC)是世界上最常见的癌症类型之一,无论男性还是女性,其死亡率都很高。Wnt/β-catenin 通路和细胞-细胞连接成分的失调、侵袭表型的获得、上皮-间充质转化(EMT)和侵袭对于结直肠癌的发生和发展非常重要。数值模拟提供了一种通过细胞内的单个成分来估计 Wnt 通路的方法,从而提供了关于 EMT、迁移和侵袭潜力的信息。通过使用这种数值模型,可以评估 EMT 抑制治疗的效果。此外,该模型可以适应“每种”细胞类型,还可以修改应用时间或治疗持续时间。

方法

我们从 EMT 的角度,通过β-连环蛋白和 E-钙黏蛋白标志物,对结直肠癌细胞系(HCT-116、SW-480)进行了特征描述,使用数值建模。为了验证数值模型,用亚致死浓度的铂(IV)配合物及其配体处理细胞。我们证实β-连环蛋白调控间充质标记物:N-钙黏蛋白、波形蛋白和 MMP-9 的表达,并降低 E-钙黏蛋白的表达。用测试标记物的蛋白表达来确定处理诱导的变化,结果显示细胞具有特异性反应。分子对接用于研究处理对细胞-细胞连接中 E-钙黏蛋白和β-连环蛋白以及在测试细胞中的单独作用的确切影响。

结果

通过β-连环蛋白和 E-钙黏蛋白(实验测量)的数值模型应用,在 EMT 进展的细胞分类中具有很大的有效性。这种数值建模更能描述具有单细胞迁移、更高间充质标记物表达和更先进的间充质表型的细胞,如 HCT-116 细胞系。该模型经过验证,结果表明 HCT-116 细胞对应用化合物更敏感,其中配体在降低迁移和侵袭方面更有效。抗迁移/侵袭作用归因于 E-钙黏蛋白的增加、细胞质β-连环蛋白表达和间充质标记物的抑制。计算方法表明,测试化学品对游离β-连环蛋白的亲和力更高,这是调节迁移/侵袭潜力的关键。

结论

我们的研究表明,无论细胞系的个体特性和 EMT 程度如何,新形成的细胞间连接都是抗迁移/侵袭过程的基础。

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