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在人类 COPD 中的比较转录组学揭示了在雪貂中独特表达的失调基因。

Comparative transcriptomics in human COPD reveals dysregulated genes uniquely expressed in ferrets.

机构信息

Department of Medicine, University of Alabama at Birmingham, MCLM 829 1918 University Blvd, Birmingham, AL, 35294-0006, USA.

Department of Biochemistry & Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL, USA.

出版信息

Respir Res. 2022 Oct 10;23(1):277. doi: 10.1186/s12931-022-02198-0.

Abstract

BACKGROUND

Chronic obstructive pulmonary disease (COPD) is a progressive lung disease with poor treatment options. However, most mouse models of COPD produce a primarily emphysematous disease not recapitulating clinically meaningful COPD features like chronic bronchitis.

METHODS

Wild-type ferrets (Mustela putorius furo) were divided randomly into two groups: whole body cigarette smoke exposure and air controls. Ferrets were exposed to smoke from 1R6F research cigarettes, twice daily for six months. RNA-sequencing was performed on RNA isolated from lung tissue. Comparative transcriptomics analyses of COPD in ferrets, mice, and humans were done to find the uniquely expressed genes. Further, Real-time PCR was performed to confirmed RNA-Seq data on multiple selected genes.

RESULTS

RNA-sequence analysis identified 420 differentially expressed genes (DEGs) that were associated with the development of COPD in ferrets. By comparative analysis, we identified 25 DEGs that are uniquely expressed in ferrets and humans, but not mice. Among DEGs, a number were related to mucociliary clearance (NEK-6, HAS1, and KL), while others have been correlated with abnormal lung function (IL-18), inflammation (TREM1, CTSB), or oxidative stress (SRX1, AHRR). Multiple cellular pathways were aberrantly altered in the COPD ferret model, including pathways associated with COPD pathogenesis in humans. Validation of these selected unique DEGs using real-time PCR demonstrated > absolute 2-fold changes in mRNA versus air controls, consistent with RNA-seq analysis.

CONCLUSION

Cigarette smoke-induced COPD in ferrets modulates gene expression consistent with human COPD and suggests that the ferret model may be uniquely well suited for the study of aspects of the disease.

摘要

背景

慢性阻塞性肺疾病(COPD)是一种进展性肺部疾病,治疗选择有限。然而,大多数 COPD 的小鼠模型主要产生肺气肿疾病,无法重现临床上有意义的 COPD 特征,如慢性支气管炎。

方法

野生型雪貂(Mustela putorius furo)随机分为两组:全身吸烟暴露组和空气对照组。雪貂每天两次接受 1R6F 研究香烟烟雾暴露,持续 6 个月。从肺组织中分离 RNA 进行 RNA 测序。对雪貂、小鼠和人类 COPD 的比较转录组学分析,以找到独特表达的基因。进一步,通过实时 PCR 对多个选定基因的 RNA-Seq 数据进行验证。

结果

RNA 测序分析确定了 420 个与雪貂 COPD 发展相关的差异表达基因(DEGs)。通过比较分析,我们确定了 25 个在雪貂和人类中特异性表达但在小鼠中不表达的 DEGs。在 DEGs 中,许多与黏液纤毛清除有关(NEK-6、HAS1 和 KL),而其他与异常肺功能(IL-18)、炎症(TREM1、CTSB)或氧化应激(SRX1、AHRR)有关。在 COPD 雪貂模型中,多个细胞途径发生异常改变,包括与人类 COPD 发病机制相关的途径。使用实时 PCR 对这些选定的独特 DEGs 进行验证,结果显示与空气对照组相比,mRNA 的变化超过绝对 2 倍,与 RNA-Seq 分析一致。

结论

香烟烟雾诱导的雪貂 COPD 调节基因表达与人类 COPD 一致,表明雪貂模型可能特别适合研究疾病的某些方面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eca6/9552453/2b3cc25a35a5/12931_2022_2198_Fig1_HTML.jpg

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