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全染色质调节蛋白:天然三价铬离子(Cr3+)与其他生物阳离子(三价铁离子、二价铁离子、镁离子和锌离子)对结合位点的竞争。

Holo-chromodulin: competition between the native Cr3+ and other biogenic cations (Fe3+, Fe2+, Mg2+, and Zn2+) for the binding sites.

作者信息

Kircheva Nikoleta, Toshev Nikolay, Dudev Todor

机构信息

Institute of Optical Materials and Technologies "Acad. J. Malinowski", Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria.

Faculty of Trade Economics and Commodity Science, Plekhanov Russian University of Economics, 117997 Moscow, Russia.

出版信息

Metallomics. 2022 Oct 27;14(10). doi: 10.1093/mtomcs/mfac082.

Abstract

Chromodulin is an oligopeptide that has an essential role for the flawless functioning of insulin. Although the precise sequence of the constituent amino acid residues and the 3D structure of the molecule has not yet been deciphered, it is known that chromodulin contains only four amino acids in the ratio of Glu-: Gly: Cys: Asp- = 4: 2: 2: 2. An indispensable part for the integrity of the molecule in its active (holo-) form are four chromium cations (hence the name) in the oxidation state of 3+, positioned in two metal binding sites containing one and three Cr3+ ions. Experimental works provide some hints/clues concerning the structure of the metal centers, although their exact composition, type, and arrangement of metal ligating entities remain enigmatic. In the current study, we endeavor to unveil possible structure(s) of the Cr3+ loaded binding sites by strictly following the evidence provided by the experimental data. Well-calibrated in silico methodology for optimization and evaluation of Gibbs free energies is applied and gives strong premises for reliably deciphering the composition/structure of chromodulin metal binding sites. Additional computations reveal the advantage of choosing Cr3+ over other tri- (Fe3+) and divalent (Fe2+, Mg2+, and Zn2+) biogenic ions for securing maximum stability of the metal-occupied binding sites.

摘要

铬调素是一种对胰岛素正常发挥功能起着关键作用的寡肽。尽管其组成氨基酸残基的精确序列和分子的三维结构尚未破解,但已知铬调素仅含有四种氨基酸,其比例为Glu-:Gly:Cys: Asp- = 4:2:2:2。在其活性(全)形式下,分子完整性不可或缺的一部分是四个处于3+氧化态的铬阳离子(因此得名),它们位于两个分别含有一个和三个Cr3+离子的金属结合位点中。实验工作提供了一些有关金属中心结构的线索,尽管它们的精确组成、类型以及金属配位实体的排列仍然未知。在当前的研究中,我们通过严格遵循实验数据提供的证据,努力揭示负载Cr3+的结合位点的可能结构。我们应用了经过良好校准的计算机模拟方法来优化和评估吉布斯自由能,并为可靠地解读铬调素金属结合位点的组成/结构提供了有力依据。额外的计算揭示了相较于其他三价(Fe3+)和二价(Fe2+、Mg2+和Zn2+)生物离子,选择Cr3+对于确保金属占据的结合位点的最大稳定性的优势。

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