从河水中分离出的多重耐药性大肠杆菌的基因组序列草图
Draft Genome Sequences of Multidrug-Resistant Escherichia coli Isolated from River Water.
作者信息
Kassem Issmat I, Hassan Jouman, Esseili Malak A, Mann David, Osman Marwan, Li Shaoting, Deng Xiangyu
机构信息
Center for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA.
Department of Public and Ecosystem Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
出版信息
Microbiol Resour Announc. 2022 Nov 17;11(11):e0082722. doi: 10.1128/mra.00827-22. Epub 2022 Oct 12.
Abstract
The spread of antibiotic resistance poses a critical challenge worldwide. Contaminated environments can become reservoirs, spreading antibiotic-resistant bacteria and genetic determinants of resistance to humans directly or indirectly. Here, we report the draft genome sequence, the resistome, virulence genes, and sequence types of seven multidrug-resistant Escherichia coli strains isolated from river water.
摘要
抗生素耐药性的传播在全球范围内构成了一项严峻挑战。受污染的环境可能成为储存库，直接或间接地将抗生素耐药菌及耐药基因决定因素传播给人类。在此，我们报告了从河水中分离出的7株多重耐药大肠杆菌菌株的基因组序列草图、耐药基因组、毒力基因及序列类型。
相似文献
1
Draft Genome Sequences of Multidrug-Resistant Escherichia coli Isolated from River Water.
Microbiol Resour Announc. 2022 Nov 17;11(11):e0082722. doi: 10.1128/mra.00827-22. Epub 2022 Oct 12.
2
Draft Genome Sequences of Multidrug-Resistant Escherichia coli Strains Isolated from River Water in Malaysia.
Microbiol Resour Announc. 2022 Jul 21;11(7):e0039922. doi: 10.1128/mra.00399-22. Epub 2022 Jun 9.
3
Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon.
J Glob Antimicrob Resist. 2021 Jun;25:114-116. doi: 10.1016/j.jgar.2021.03.001. Epub 2021 Mar 21.
4
Draft genome sequence of a multidrug-resistant tetA/IncF-harbouring Escherichia coli ST906 obtained from a soil cultivated with jaboticaba (Plinia cauliflora).
J Glob Antimicrob Resist. 2019 Mar;16:181-182. doi: 10.1016/j.jgar.2019.01.026. Epub 2019 Jan 24.
5
Draft genome sequence of a multidrug-resistant Escherichia coli ST189 carrying several acquired antimicrobial resistance genes obtained from Brazilian soil.
J Glob Antimicrob Resist. 2019 Jun;17:321-322. doi: 10.1016/j.jgar.2019.05.018. Epub 2019 May 22.
6
Genetic diversity and whole genome sequence analysis data of multidrug resistant atypical enteropathogenic Escherichia coli O177 strains: An assessment of food safety and public health implications.
Int J Food Microbiol. 2022 Mar 16;365:109555. doi: 10.1016/j.ijfoodmicro.2022.109555. Epub 2022 Jan 26.
7
Draft Genome Sequences of Colistin-Resistant and Carrying Escherichia coli Strains Isolated from Irrigation Water.
Microbiol Resour Announc. 2021 Apr 8;10(14):e00120-21. doi: 10.1128/MRA.00120-21.
8
Virulence and antimicrobial resistance determinants of verotoxigenic Escherichia coli (VTEC) and of multidrug-resistant E. coli from foods of animal origin illegally imported to the EU by flight passengers.
Int J Food Microbiol. 2015 Sep 16;209:52-9. doi: 10.1016/j.ijfoodmicro.2015.06.026. Epub 2015 Jul 3.
9
Draft genome sequence of Escherichia coli ST977: A clinical multidrug-resistant strain harbouring bla isolated from a bloodstream infection.
J Glob Antimicrob Resist. 2018 Jun;13:121-122. doi: 10.1016/j.jgar.2018.04.005. Epub 2018 Apr 14.
10
Draft genome sequences of two fluoroquinolone-resistant CTX-M-15-producing Escherichia coli ST90 (ST23 complex) isolated from a calf and a dairy cow in South America.
J Glob Antimicrob Resist. 2017 Dec;11:145-147. doi: 10.1016/j.jgar.2017.10.009. Epub 2017 Oct 31.
引用本文的文献
1
Draft genome sequences of antibiotic-resistant and species isolated from imported fresh produce in Georgia, USA.
Microbiol Resour Announc. 2024 Jun 11;13(6):e0113923. doi: 10.1128/mra.01139-23. Epub 2024 May 2.
2
Genomic analysis of isolates from Lebanon reveals marked genetic diversity and antimicrobial resistance.
Microb Genom. 2023 Dec;9(12). doi: 10.1099/mgen.0.001157.
3
The emergence of carbapenemase-producing in hospitals: a major challenge for a debilitated healthcare system in Lebanon.
Front Public Health. 2023 Nov 20;11:1290912. doi: 10.3389/fpubh.2023.1290912. eCollection 2023.
4
Assessment of the Microbiological Acceptability of White Cheese (Akkawi) in Lebanon and the Antimicrobial Resistance Profiles of Associated .
Antibiotics (Basel). 2023 Mar 19;12(3):610. doi: 10.3390/antibiotics12030610.
5
The indelible toll of enteric pathogens: Prevalence, clinical characterization, and seasonal trends in patients with acute community-acquired diarrhea in disenfranchised communities.
PLoS One. 2023 Mar 13;18(3):e0282844. doi: 10.1371/journal.pone.0282844. eCollection 2023.
本文引用的文献
1
Nationwide Assessment of Water Quality in Rivers across Lebanon by Quantifying Fecal Indicators Densities and Profiling Antibiotic Resistance of .
Antibiotics (Basel). 2021 Jul 20;10(7):883. doi: 10.3390/antibiotics10070883.
2
Draft Genome Sequences of Colistin-Resistant and Carrying Escherichia coli Strains Isolated from Irrigation Water.
Microbiol Resour Announc. 2021 Apr 8;10(14):e00120-21. doi: 10.1128/MRA.00120-21.
3
Draft Genome Sequences of Multidrug-Resistant and -Harboring Escherichia coli Isolated from Drinking and Well Waters Used in Syrian Refugee Camps.
Microbiol Resour Announc. 2021 Jan 14;10(2):e01252-20. doi: 10.1128/MRA.01252-20.
4
Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data.
J Clin Microbiol. 2020 Sep 22;58(10). doi: 10.1128/JCM.01269-20.
5
Dissemination of multidrug-resistant Escherichia coli harboring the mobile colistin resistance gene mcr-1.1 on transmissible plasmids in the Mediterranean Sea.
J Glob Antimicrob Resist. 2020 Sep;22:84-86. doi: 10.1016/j.jgar.2020.05.007. Epub 2020 Jun 4.
6
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Nucleic Acids Res. 2020 Jan 8;48(D1):D517-D525. doi: 10.1093/nar/gkz935.
7
Emergence of plasmid-borne colistin resistance gene mcr-1 in multidrug-resistant Escherichia coli isolated from irrigation water in Lebanon.
Int J Antimicrob Agents. 2019 Jul;54(1):102-104. doi: 10.1016/j.ijantimicag.2019.05.005. Epub 2019 May 7.
8
Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples.
Appl Environ Microbiol. 2018 Jan 31;84(4). doi: 10.1128/AEM.02340-17. Print 2018 Feb 15.
9
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
10
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
Zotero 插件