Laser Laboratory for Fast Reactions, Dep. Of Biochemistry and Molecular Biology, Life Sciences, Tel Aviv University, Israel.
Laser Laboratory for Fast Reactions, Dep. Of Biochemistry and Molecular Biology, Life Sciences, Tel Aviv University, Israel.
Biochim Biophys Acta Biomembr. 2023 Jan 1;1865(1):184071. doi: 10.1016/j.bbamem.2022.184071. Epub 2022 Oct 14.
The Coulomb-cage is defined as the space where the electrostatic interaction between two bodies is more intensive than the thermal energy (kT). For small molecule, the Coulomb-cage is a small sphere, extending only few water molecules towards the bulk and its radius is sensitive to the ionic strength of the solution. For charged proteins or membranal structures, the Coulomb-cage can engulf large fraction of the surface and provides a preferred pathway for ion propagation along the surface. Similarly, electrostatic potential at the inner space of a channel can form preferential trajectories passage for ions. The dynamics of ions inside the Coulomb-cage of ions was formulated by the studies of proton-anion recombination of excited photoacids. In the present article, we recount the study of intra- Coulomb-cage reaction taking place on the surface of macro-molecular bodies like micelles, membranes, proteins and intra-protein cavities. The study progressed stepwise, tracing the dynamics of a proton ejected from a photo-acid molecule located at defined sites (on membrane, inter-membrane space, active site of enzyme, inside Large Pore Channels etc.). Accumulation of experimental observations encouraged us to study of the reaction mechanism by molecular dynamics simulations of ions within the Coulomb-cage of proteins surface or inside large pores. The intra-Coulomb-cage proton transfer events follows closely the fine structure of the electrostatic field inside the cage and reflects the shape of nearby dielectric boundaries, the temporal ordering of the solvent molecules and the structural fluctuations of the charged side chains. The article sums some 40 years of research, which in retrospect clarifies the intra-Coulomb-cage reaction mechanism.
库仑笼被定义为两个物体之间的静电相互作用比热能(kT)更强烈的空间。对于小分子,库仑笼是一个小球体,仅向主体延伸几个水分子,其半径对溶液的离子强度敏感。对于带电蛋白质或膜状结构,库仑笼可以包围大部分表面,并为离子沿着表面传播提供首选途径。同样,通道内部的静电势可以形成离子优先通过的轨迹。通过研究激发光酸的质子-阴离子复合,离子在库仑笼内的离子动力学得到了描述。在本文中,我们回顾了在大分子体(如胶束、膜、蛋白质和蛋白质内腔)表面上发生的库仑笼内反应的研究。研究逐步进行,追踪从位于定义位置(在膜上、膜间空间、酶的活性部位、大孔道内等)的光酸分子中逐出的质子的动力学。实验观察的积累鼓励我们通过蛋白质表面或大孔内库仑笼内离子的分子动力学模拟来研究反应机制。库仑笼内质子转移事件紧密遵循笼内静电场的精细结构,并反映了附近介电边界的形状、溶剂分子的时间顺序和带电侧链的结构波动。本文总结了 40 多年的研究,回顾了库仑笼内反应机制。