Department of Biology, University of York, Heslington, York, UK.
Cranfield University, College Road, Cranfield, Bedfordshire, MK43 0AL, UK.
Microb Genom. 2022 Oct;8(10). doi: 10.1099/mgen.0.000881.
Bioremediation of metaldehyde from drinking water using metaldehyde-degrading strains has recently emerged as a promising alternative. Whole-genome sequencing was used to obtain full genomes for metaldehyde degraders E1 and CMET-H. For the former, the genetic context of the metaldehyde-degrading genes had not been explored, while for the latter, none of the degrading genes themselves had been identified. In E1, IS and IS-family insertion sequences (ISs) were found surrounding the metaldehyde-degrading gene cluster located in plasmid pAME76. This cluster was located in closely-related plasmids and associated to identical ISs in most metaldehyde-degrading β- and γ-Proteobacteria, indicating horizontal gene transfer (HGT). For CMET-H, sequence analysis suggested a phytanoyl-CoA family oxygenase as a metaldehyde-degrading gene candidate due to its close homology to a previously identified metaldehyde-degrading gene known as . Heterologous gene expression in alongside degradation tests verified its functional significance and the degrading gene homolog was henceforth called . It was found that is hosted within the conjugative plasmid pSM1 and its genetic context suggested a crossover between the metaldehyde and acetoin degradation pathways. Here, specific replicons and ISs responsible for maintaining and dispersing metaldehyde-degrading genes in α, β and γ-Proteobacteria through HGT were identified and described. In addition, a homologous gene implicated in the first step of metaldehyde utilisation in an α-Proteobacteria was uncovered. Insights into specific steps of this possible degradation pathway are provided.
利用能够降解甲醇的菌株对饮用水中的甲醇进行生物修复,最近已成为一种很有前途的替代方法。全基因组测序用于获得两种甲醇降解菌 E1 和 CMET-H 的完整基因组。对于前者,尚未探索其降解甲醇基因的遗传背景,而对于后者,尚未鉴定出任何降解基因本身。在 E1 中,发现了插入序列(IS)和 IS 家族插入序列(ISs)围绕着位于质粒 pAME76 上的甲醇降解基因簇。该基因簇位于密切相关的质粒中,并且与大多数能够降解甲醇的β-和γ-变形菌中的相同 IS 相关,表明存在水平基因转移(HGT)。对于 CMET-H,序列分析表明植烷酰辅酶 A 家族加氧酶是甲醇降解基因的候选基因,因为它与先前鉴定的一种已知的甲醇降解基因具有密切的同源性,称为。在 中异源基因表达和降解测试验证了其功能意义,因此降解基因的同源物被称为。发现 位于可接合的质粒 pSM1 中,其遗传背景表明在甲醇和乙酰醇降解途径之间发生了交叉。在这里,鉴定并描述了负责通过 HGT 在α、β和γ-变形菌中维持和传播降解甲醇基因的特定复制子和 ISs。此外,还发现了一个与α-变形菌中甲醇利用的第一步有关的同源基因。提供了该可能降解途径的特定步骤的见解。