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变形杆菌中的移动遗传元件推动了灭多威代谢途径的传播。

Dissemination of metaldehyde catabolic pathways is driven by mobile genetic elements in Proteobacteria.

机构信息

Department of Biology, University of York, Heslington, York, UK.

Cranfield University, College Road, Cranfield, Bedfordshire, MK43 0AL, UK.

出版信息

Microb Genom. 2022 Oct;8(10). doi: 10.1099/mgen.0.000881.

Abstract

Bioremediation of metaldehyde from drinking water using metaldehyde-degrading strains has recently emerged as a promising alternative. Whole-genome sequencing was used to obtain full genomes for metaldehyde degraders E1 and CMET-H. For the former, the genetic context of the metaldehyde-degrading genes had not been explored, while for the latter, none of the degrading genes themselves had been identified. In E1, IS and IS-family insertion sequences (ISs) were found surrounding the metaldehyde-degrading gene cluster located in plasmid pAME76. This cluster was located in closely-related plasmids and associated to identical ISs in most metaldehyde-degrading β- and γ-Proteobacteria, indicating horizontal gene transfer (HGT). For CMET-H, sequence analysis suggested a phytanoyl-CoA family oxygenase as a metaldehyde-degrading gene candidate due to its close homology to a previously identified metaldehyde-degrading gene known as . Heterologous gene expression in alongside degradation tests verified its functional significance and the degrading gene homolog was henceforth called . It was found that is hosted within the conjugative plasmid pSM1 and its genetic context suggested a crossover between the metaldehyde and acetoin degradation pathways. Here, specific replicons and ISs responsible for maintaining and dispersing metaldehyde-degrading genes in α, β and γ-Proteobacteria through HGT were identified and described. In addition, a homologous gene implicated in the first step of metaldehyde utilisation in an α-Proteobacteria was uncovered. Insights into specific steps of this possible degradation pathway are provided.

摘要

利用能够降解甲醇的菌株对饮用水中的甲醇进行生物修复,最近已成为一种很有前途的替代方法。全基因组测序用于获得两种甲醇降解菌 E1 和 CMET-H 的完整基因组。对于前者,尚未探索其降解甲醇基因的遗传背景,而对于后者,尚未鉴定出任何降解基因本身。在 E1 中,发现了插入序列(IS)和 IS 家族插入序列(ISs)围绕着位于质粒 pAME76 上的甲醇降解基因簇。该基因簇位于密切相关的质粒中,并且与大多数能够降解甲醇的β-和γ-变形菌中的相同 IS 相关,表明存在水平基因转移(HGT)。对于 CMET-H,序列分析表明植烷酰辅酶 A 家族加氧酶是甲醇降解基因的候选基因,因为它与先前鉴定的一种已知的甲醇降解基因具有密切的同源性,称为。在 中异源基因表达和降解测试验证了其功能意义,因此降解基因的同源物被称为。发现 位于可接合的质粒 pSM1 中,其遗传背景表明在甲醇和乙酰醇降解途径之间发生了交叉。在这里,鉴定并描述了负责通过 HGT 在α、β和γ-变形菌中维持和传播降解甲醇基因的特定复制子和 ISs。此外,还发现了一个与α-变形菌中甲醇利用的第一步有关的同源基因。提供了该可能降解途径的特定步骤的见解。

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