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多环芳烃特异性环羟基化双加氧酶:多样性、结构、功能及蛋白质工程

Polyaromatic Hydrocarbon Specific Ring Hydroxylating Dioxygenases: Diversity, Structure, Function, and Protein Engineering.

作者信息

Kaur Tanjot, Lakhawat Sudarshan Singh, Kumar Vikram, Sharma Vinay, Neeraj Ravi Ranjan Kumar, Sharma Pushpender Kumar

机构信息

Department of Biotechnology, Sri Guru Granth Sahib Word University, Fatehgarh Sahib, Punjab, India.

Amity Institute of Biotechnology, Amity University Rajasthan, Jaipur 303002, Rajasthan, India.

出版信息

Curr Protein Pept Sci. 2023;24(1):7-21. doi: 10.2174/1389203724666221108114537.

Abstract

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitously present in the environment. These compounds have demonstrated both mutagenic and carcinogenic properties. In the past few decades, scientists have constantly been looking for a possible route to their biological degradation. Bacterial ring hydroxylating dioxygenases (RHDs) implicated in the polycyclic aromatic hydrocarbon degradation comprise a large family of enzymes. RHD catalyzes the stereospecific oxidation of PAHs by incorporating molecular oxygen into inert aromatic nuclei. These biocatalysts hold the potential to completely transform and mineralize toxic forms of these compounds into non-toxic forms. RHDsmediated oxygenation produces cis-dihydrodiols, a chiral compound used in pharmaceutical industries. The Molecular investigation of 16S rRNA and key functional genes involved in pollutant degradation have revealed the dominant occurrence of phylum proteobacteria and actinobacteria in hydrocarbonpolluted environments. The present review is aimed at narrating the diversity, distribution, structural and functional characteristics of RHDs. The review further highlights key amino acids participating in RHDs catalysis. It also discusses the robustness of protein engineering methods in improving the structural and functional activity of the ring hydroxylating dioxygenases.

摘要

多环芳烃(PAHs)广泛存在于环境中。这些化合物已被证明具有致突变性和致癌性。在过去几十年里,科学家们一直在不断寻找其生物降解的可能途径。参与多环芳烃降解的细菌环羟基化双加氧酶(RHDs)是一个庞大的酶家族。RHD通过将分子氧掺入惰性芳香核中,催化多环芳烃的立体特异性氧化。这些生物催化剂有可能将这些化合物的有毒形式完全转化并矿化为无毒形式。RHD介导的氧合作用产生顺式二氢二醇,这是一种在制药行业中使用的手性化合物。对参与污染物降解的16S rRNA和关键功能基因的分子研究表明,在烃污染环境中,变形菌门和放线菌门占主导地位。本综述旨在阐述RHDs的多样性、分布、结构和功能特征。该综述进一步强调了参与RHD催化的关键氨基酸。它还讨论了蛋白质工程方法在提高环羟基化双加氧酶的结构和功能活性方面的稳健性。

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