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利用外切酶 III(Exo-III)辅助信号放大和个人血糖仪进行灵敏便携的细菌检测。

Sensitive and Portable Detection of Bacteria Using Exonuclease-III (Exo-III) Assisted Signal Amplification and Personal Glucose Meters.

机构信息

Department of Urology Surgery, Ningbo Yinzhou No. 2 Hospital, No. 998 Qianhe Road, Yinzhou District, Ningbo City, 315100, Zhejiang Province, People's Republic of China.

出版信息

Mol Biotechnol. 2023 Jun;65(6):934-941. doi: 10.1007/s12033-022-00597-8. Epub 2022 Nov 11.

Abstract

Despite major advances in combating pathogenic bacteria caused infection, infectious diseases remain a major cause of death today. A variety of bacteria detection approaches have been established by exploiting the aptamer to specifically identify target. However, these methods require specific equipment or laboratory based instruments, which is expensive and not easily available to the public. To deal with this issue, we develop here a portable and sensitive pathogenic bacteria detection approach through integrating capture probe based recognition and Exo-III assisted signal amplification. In this method, a designed capture probe identifies the surface protein of target bacteria, leading to the release of blocker sequence. The released blocker sequence mediates Exo-III enzyme based signal amplification, generating a large amount of signal strand DNA (ssDNA) sequences. The obtained ssDNA works as a linker to conjugate streptavidin magnetic beads (SMBs) with DNA invertase. After magnet based enrichment and washing away of free DNA invertase, the SMBs-DNA invertase complex is used to catalyze the hydrolysis of sucrose into glucose for PGM readout. Based on this, the approach exhibits a 6 order of magnitudes in detecting Staphylococcus Aureus (S. aureus) with the limit of detection as low as 78 cfu/mL. In addition, the capability to specifically detect target bacteria and high repeatability (relative standard deviation, 4.44%) endows the method wider applicable scenes. In all, the established shows a promising prospect in the detection of bacteria pathogen and the early-diagnosis of bacterial infections.

摘要

尽管在对抗引起感染的病原菌方面取得了重大进展,但传染病仍是当今主要的死亡原因之一。已经建立了多种利用适体特异性识别靶标的细菌检测方法。然而,这些方法需要特定的设备或基于实验室的仪器,价格昂贵且公众不易获得。为了解决这个问题,我们通过整合基于捕获探针的识别和外切酶 III 辅助的信号放大,开发了一种便携式和灵敏的致病菌检测方法。在该方法中,设计的捕获探针识别靶细菌的表面蛋白,导致阻断序列的释放。释放的阻断序列介导基于外切酶 III 的信号放大,产生大量的信号链 DNA(ssDNA)序列。所得的 ssDNA 作为链接物将链霉亲和素磁珠(SMB)与 DNA 转化酶偶联。在基于磁的富集和游离 DNA 转化酶的洗脱后,SMB-DNA 转化酶复合物用于催化蔗糖水解为葡萄糖以进行 PGM 读出。基于此,该方法在检测金黄色葡萄球菌(S. aureus)方面表现出 6 个数量级的检测范围,检测限低至 78 cfu/mL。此外,该方法能够特异性地检测靶细菌且具有高重复性(相对标准偏差为 4.44%),赋予了该方法更广泛的应用场景。总之,该方法在细菌病原体的检测和细菌感染的早期诊断方面显示出了广阔的应用前景。

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