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渗透溶质对甲酸脱氢酶的酶稳定性和反应平衡的影响。

Osmolyte effect on enzymatic stability and reaction equilibrium of formate dehydrogenase.

机构信息

Laboratory of Thermodynamics, Department of Biochemical and Chemical Engineering, TU Dortmund University, Emil-Figge-Str. 70, 44227 Dortmund, Germany.

Departamento de Ingeniería Química, Faculty of Engineering, Universidad de Concepción, Concepción, Chile.

出版信息

Phys Chem Chem Phys. 2022 Nov 23;24(45):27930-27939. doi: 10.1039/d2cp04011e.

Abstract

Osmolytes are well-known biocatalyst stabilisers as they promote the folded state of proteins, and a stabilised biocatalyst might also improve reaction kinetics. In this work, the influence of four osmolytes (betaine, glycerol, trehalose, and trimethylamine -oxide) on the activity and stability of formate dehydrogenase FDH was studied experimentally and theoretically. Scanning differential fluorimetric studies were performed to assess the thermal stability of FDH, while UV detection was used to reveal changes in FDH activity and reaction equilibrium at osmolyte concentrations between 0.25 and 1 mol kg. The thermodynamic model ePC-SAFT advanced allowed predicting the effects of osmolyte on the reaction equilibrium by accounting for interactions involving osmolyte, products, substrates, and water. The results show that osmolytes at low concentrations were beneficial for both, thermal stability and FDH activity, while keeping the equilibrium yield at high level. Molecular dynamics simulations were used to describe the solvation around the FDH surface and the volume exclusion effect, proofing the beneficial effect of the osmolytes on FDH activity, especially at low concentrations of trimethylamine -oxide and betaine. Different mechanisms of stabilisation (dependent on the osmolyte) show the importance of studying solvent-protein dynamics towards the design of optimised biocatalytic processes.

摘要

渗透剂是众所周知的生物催化剂稳定剂,因为它们可以促进蛋白质的折叠状态,而稳定的生物催化剂也可能改善反应动力学。在这项工作中,我们通过实验和理论研究了四种渗透剂(甜菜碱、甘油、海藻糖和三甲胺氧化物)对甲酸脱氢酶(FDH)活性和稳定性的影响。通过扫描差示荧光研究评估了 FDH 的热稳定性,而紫外检测则用于揭示在渗透剂浓度为 0.25 至 1 mol kg 之间时 FDH 活性和反应平衡的变化。先进的 ePC-SAFT 热力学模型允许通过考虑涉及渗透剂、产物、底物和水的相互作用来预测渗透剂对反应平衡的影响。结果表明,低浓度的渗透剂有利于提高 FDH 的热稳定性和活性,同时保持高的平衡产率。分子动力学模拟用于描述 FDH 表面的溶剂化和体积排除效应,证明了渗透剂对 FDH 活性的有益影响,特别是在低浓度的三甲胺氧化物和甜菜碱时。不同的稳定机制(取决于渗透剂)表明,研究溶剂-蛋白质动力学对于设计优化的生物催化过程非常重要。

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