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四种来自蟹和虾的十足目虹彩病毒 1 分离株的全基因组序列及特征分析

Complete genome sequence and characterization of four Decapod iridescent virus 1 isolates from crab and shrimp.

机构信息

Key Laboratory of Marine Biotechnology of Fujian Province, College of Marine Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Key Laboratory of Mariculture & Enhancement of Zhejiang Province, Zhejiang Marine Fisheries Research Institute, Zhoushan 316100, China; Marine and Fisheries Research Institute, Zhejiang Ocean University, Zhoushan 316100, China.

出版信息

J Invertebr Pathol. 2023 Feb;196:107852. doi: 10.1016/j.jip.2022.107852. Epub 2022 Nov 13.


DOI:10.1016/j.jip.2022.107852
PMID:36384189
Abstract

Decapod iridescent virus 1 (DIV1) is an emerging viral pathogen that infects diverse freshwater and marine crustacean species and causes considerable economic losses that seriously threaten crustacean farming and has caused enormous financial losses in recent years. In this study, we detected DIV1 from diseased crabs, with clinical symptoms such as loss of vitality and white gill filaments with edema, in a Marsupenaeus japonicus and Portunus trituberculatus polyculture pond. Four DIV1 isolates from crab samples (two isolates) and shrimp samples (two isolates) were sequenced and assembled successfully. Molecular characterization and phylogenetic analysis of the four DIV1 isolates were conducted. The DIV1 isolates from crab samples have a close genetic relationship with shrimp DIV1s, indicating the viruses share the same ancestor with those from shrimps. Our study provides valuable insights into disease prevention and control of the shrimp-crab polyculture system.

摘要

十足目虹彩病毒 1 型(DIV1)是一种新兴的病毒病原体,感染多种淡水和海水甲壳类动物物种,造成相当大的经济损失,严重威胁甲壳类养殖,并在近年来造成了巨大的经济损失。在这项研究中,我们从活力下降和出现水肿的白色虾鳃丝等临床症状的患病螃蟹中检测到了 DIV1,这些螃蟹来自于一个日本沼虾和三疣梭子蟹混养池塘。我们成功地对来自螃蟹样本(两个分离株)和虾样本(两个分离株)的四个 DIV1 分离株进行了测序和组装。我们对这四个 DIV1 分离株进行了分子特征和系统发育分析。来自螃蟹样本的 DIV1 分离株与虾 DIV1 具有密切的遗传关系,表明这些病毒与来自虾的病毒具有相同的祖先。我们的研究为虾蟹混养系统的疾病预防和控制提供了有价值的见解。

相似文献

[1]
Complete genome sequence and characterization of four Decapod iridescent virus 1 isolates from crab and shrimp.

J Invertebr Pathol. 2023-2

[2]
Emergence of Decapod iridescent virus 1 in cultured shrimp from Taiwan in 2020.

Vet Med Sci. 2023-9

[3]
Integrated analysis of intestinal microbiota and metabolomic reveals that decapod iridescent virus 1 (DIV1) infection induces secondary bacterial infection and metabolic reprogramming in .

Front Immunol. 2022

[4]
Infection with Decapod iridescent virus 1: an emerging disease in shrimp culture.

Arch Microbiol. 2022-11-1

[5]
Isolation and the pathogenicity characterization of Decapod iridescent virus 1 (DIV1) from diseased Macrobrachium nipponense and its activation on host immune response.

Fish Shellfish Immunol. 2024-3

[6]
The Molecular Mechanism of Hemocyte Immune Response in Infected With Decapod Iridescent Virus 1.

Front Microbiol. 2021-8-26

[7]
Integrated Analysis of mRNA-Seq and MiRNA-Seq Reveals the Molecular Mechanism of the Intestinal Immune Response in Under Decapod Iridescent Virus 1 Infection.

Front Immunol. 2022-1-18

[8]
Research into the hemocyte immune response of Fenneropenaeus merguiensis under decapod iridescent virus 1 (DIV1) challenge using transcriptome analysis.

Fish Shellfish Immunol. 2020-9

[9]
Development and comparison of qPCR and qLAMP for rapid detection of the decapod iridescent virus 1 (DIV1).

J Invertebr Pathol. 2021-6

[10]
Molecular docking and simulation studies of Chloroquine, Rimantadine and CAP-1 as potential repurposed antivirals for decapod iridescent virus 1 (DIV1).

Fish Shellfish Immunol Rep. 2023-10-8

引用本文的文献

[1]
Development and application of a quantitative real-time PCR method for detection of Decapod iridescent virus 1.

Front Microbiol. 2024-9-19

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