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新型环丙沙星和诺氟沙星-四氮唑杂化物作为潜在的抗菌和抗病毒药物:靶向拓扑异构酶和SARS-CoV-2-MPro

Novel ciprofloxacin and norfloxacin-tetrazole hybrids as potential antibacterial and antiviral agents: Targeting topoisomerase and SARS-CoV-2-MPro.

作者信息

Cardoso-Ortiz Jaime, Leyva-Ramos Socorro, Baines Kim M, Gómez-Durán Cesar Fernando Azael, Hernández-López Hiram, Palacios-Can Francisco José, Valcarcel-Gamiño José Antonio, Leyva-Peralta Mario Alberto, Razo-Hernández Rodrigo Said

机构信息

Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Zacatecas 98160, México.

Facultad de Ciencias Químicas, Universidad Autónoma de San Luis Potosí, San Luis Potosí 78210, México.

出版信息

J Mol Struct. 2023 Feb 15;1274:134507. doi: 10.1016/j.molstruc.2022.134507. Epub 2022 Nov 7.

DOI:10.1016/j.molstruc.2022.134507
PMID:36406777
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9640164/
Abstract

This study was designed to synthesize hybridizing molecules from ciprofloxacin and norfloxacin by enhancing their biological activity with tetrazoles. The synthesized compounds were investigated in the interaction with the target enzyme of fluoroquinolones (DNA gyrase) and COVID-19 main protease using molecular similarity, molecular docking, and QSAR studies. A QSAR study was carried out to explore the antibacterial activity of our compounds over Staphylococcus aureus a QSAR study, using descriptors obtained from the docking with DNA gyrase, in combination with steric type descriptors, was done obtaining suitable statistical parameters ( , , and ) to support our results. The binding interaction of our compounds with CoV-2-Mpro was done by molecular docking and were compared with different covalent and non-covalent inhibitors of this enzyme. For the docking studies we used several crystallographic structures of the CoV-2-Mpro. The interaction energy values and binding mode with several key residues, by our compounds, support the capability of them to be CoV-2-Mpro inhibitors. The characterization of the compounds was completed using FT-IR, H-NMR, C-NMR, F-NMR and HRMS spectroscopic methods. The results showed that compounds and had the potential to be further studied as new antibacterial and antiviral compounds.

摘要

本研究旨在通过用四氮唑增强环丙沙星和诺氟沙星的生物活性来合成杂交分子。使用分子相似性、分子对接和定量构效关系(QSAR)研究,对合成的化合物与氟喹诺酮类药物的靶酶(DNA促旋酶)和新冠病毒主要蛋白酶的相互作用进行了研究。开展了一项QSAR研究,以探索我们的化合物对金黄色葡萄球菌的抗菌活性,利用从与DNA促旋酶对接获得的描述符,并结合空间类型描述符,进行QSAR研究,获得了合适的统计参数( 、 和 )来支持我们的结果。通过分子对接研究了我们的化合物与新冠病毒主要蛋白酶(CoV-2-Mpro)的结合相互作用,并与该酶的不同共价和非共价抑制剂进行了比较。对于对接研究,我们使用了新冠病毒主要蛋白酶的几种晶体结构。我们的化合物与几个关键残基的相互作用能值和结合模式,支持了它们作为新冠病毒主要蛋白酶抑制剂的能力。使用傅里叶变换红外光谱(FT-IR)、氢核磁共振(H-NMR)、碳核磁共振(C-NMR)、氟核磁共振(F-NMR)和高分辨质谱(HRMS)光谱方法完成了化合物的表征。结果表明,化合物 和 有潜力作为新型抗菌和抗病毒化合物进行进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/59f94038b923/gr15_lrg.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/4f4f35df47b5/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/c820bc337c60/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/2da25a56d4b6/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/0264314453e8/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/1f787a7f5cea/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/645e5c7c53d9/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/522c67f6636f/gr8_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/12d2cc17751a/gr9_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/36c3af76a2cb/gr10_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/eaf076dec586/gr11_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/bf05252fda6a/gr12_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/ae818bd18a71/gr13_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/1d09262193db/gr14_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32ab/9640164/59f94038b923/gr15_lrg.jpg

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