Laboratory of Applied Thermodynamics and Molecular Modeling, Department of Chemistry, Faculty of Science, University of Tlemcen, Tlemcen, Algeria.
J Biomol Struct Dyn. 2023 Nov;41(19):9915-9930. doi: 10.1080/07391102.2022.2148750. Epub 2022 Nov 29.
Computer-based drug design is increasingly used in strategies for discovering new molecules for therapeutic purposes. The targeted drug is ketoprofen (KTP), which belongs to the family of non-steroidal anti-inflammatory drugs, which are widely used for the treatment of pain, fever, inflammation and certain types of cancers. In an attempt to rationalize the search for 72 new potential anti-inflammatory compounds on the COX-2 enzyme, we carried out an protocol that successfully combines molecular docking towards COX-2 receptor (5F1A), ADMET pharmacokinetic parameters, drug-likeness rules and molecular electrostatic potential (MEP). It was found that six of the compounds analyzed satisfy with the associated values to physico-chemical properties as key evaluation parameters for the drug-likeness and demonstrate a hydrophobic character which makes their solubility in aqueous media difficult and easy in lipids. All the compounds presented good ADMET profile and they showed an interaction with the amino acids responsible for anti-inflammatory activity of the COX-2 isoenzyme. The calculation of the MEP of the six analogues reveals new preferential sites involving the formation of new bonds. Consequently, this result allowed us to understand the origin of the potential increase in the anti-inflammatory activity of the candidates. Finally, it was obtained that six compounds have a binding mode, binding energy, and stability in the active site of COX-2 like the reference drug ketoprofen, suggesting that these compounds could become a powerful candidate in the inhibition of the COX-2 enzyme.Communicated by Ramaswamy H. Sarma.
计算机辅助药物设计越来越多地用于发现治疗目的新分子的策略。目标药物是酮洛芬(KTP),它属于非甾体抗炎药家族,广泛用于治疗疼痛、发烧、炎症和某些类型的癌症。为了合理寻找针对 COX-2 酶的 72 种新的潜在抗炎化合物,我们进行了一项方案,该方案成功地将分子对接与 COX-2 受体(5F1A)、ADMET 药代动力学参数、药物相似性规则和分子静电势(MEP)相结合。结果发现,分析的六种化合物符合与物理化学性质相关的关联值,这些值是药物相似性的关键评估参数,并表现出疏水性,这使得它们在水介质中的溶解度变得困难,而在脂质中则容易。所有化合物均具有良好的 ADMET 特征,并且与负责 COX-2 同工酶抗炎活性的氨基酸相互作用。六种类似物的 MEP 计算揭示了新的优先结合部位,涉及形成新的键。因此,该结果使我们能够理解候选物抗炎活性潜在增加的原因。最后,得到了六个化合物与参考药物酮洛芬一样具有结合模式、结合能和在 COX-2 活性部位的稳定性,这表明这些化合物可能成为抑制 COX-2 酶的有力候选物。由 Ramaswamy H. Sarma 交流。