Institute of Marine and Environmental Technology, University System of Maryland, Baltimore, MD 21202, USA.
Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21202, USA.
Int J Mol Sci. 2022 Dec 9;23(24):15620. doi: 10.3390/ijms232415620.
The polyextremophilic β-galactosidase enzyme of the haloarchaeon functions in extremely cold and hypersaline conditions. To better understand the basis of polyextremophilic activity, the enzyme was studied using steady-state kinetics and molecular dynamics at temperatures ranging from 10 °C to 50 °C and salt concentrations from 1 M to 4 M KCl. Kinetic analysis showed that while catalytic efficiency (/) improves with increasing temperature and salinity, is reduced with decreasing temperatures and increasing salinity, consistent with improved substrate binding at low temperatures. In contrast, was similar from 2-4 M KCl across the temperature range, with the calculated enthalpic and entropic components indicating a threshold of 2 M KCl to lower the activation barrier for catalysis. With molecular dynamics simulations, the increase in per-residue root-mean-square fluctuation (RMSF) was observed with higher temperature and salinity, with trends like those seen with the catalytic efficiency, consistent with the enzyme's function being related to its flexibility. Domain A had the smallest change in flexibility across the conditions tested, suggesting the adaptation to extreme conditions occurs via regions distant to the active site and surface accessible residues. Increased flexibility was most apparent in the distal active sites, indicating their importance in conferring salinity and temperature-dependent effects.
嗜盐极端微生物β-半乳糖苷酶在极冷和高盐条件下发挥作用。为了更好地理解其耐极端环境的机制,本研究使用稳态动力学和分子动力学,在 10°C 至 50°C 的温度范围和 1 M 至 4 M KCl 的盐浓度下对该酶进行了研究。动力学分析表明,尽管催化效率()随温度和盐度的升高而提高,但随温度的降低和盐度的升高而降低,这与低温下改善底物结合一致。相比之下,在整个温度范围内,从 2 M 到 4 M KCl 的变化不大,计算出的焓和熵分量表明,2 M KCl 是降低催化活化能垒的下限。通过分子动力学模拟,观察到随着温度和盐度的升高,每个残基的均方根波动(RMSF)增加,与催化效率的趋势相似,这与酶的功能与其灵活性有关。在测试的条件下,A 结构域的灵活性变化最小,这表明对极端条件的适应是通过远离活性位点和表面可及残基的区域发生的。在远端活性部位观察到的灵活性增加最为明显,表明它们在赋予盐度和温度依赖性方面的重要性。