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利用免疫信息学方法预测寨卡病毒包膜蛋白的构象性和线性B细胞表位

Prediction of Conformational and Linear B-Cell Epitopes on Envelop Protein of Zika Virus Using Immunoinformatics Approach.

作者信息

Srivastava Kirti, Srivastava Vivek

机构信息

Department of Biotechnology, Faculty of Engineering and Technology, Rama University Uttar Pradesh, Kanpur, India.

出版信息

Int J Pept Res Ther. 2023;29(1):17. doi: 10.1007/s10989-022-10486-y. Epub 2023 Jan 9.

Abstract

The current spread of Zika virus infection in India has become a public health issue due to the virus's possible link to birth abnormalities and neurological disorders. There is a need for enhanced vaccines or drugs as a result of its epidemic outbreak and the lack of potential medication. B-cell mediated adaptive immunity is capable of developing pathogen-specific memory that confers immunological protection. Therefore, in this study, the envelope protein of the Zika virus was retrieved from the NCBI protein database. The ABCpred and BepiPred software were used to discover linear B-cell epitopes on envelope protein. Conformational B-cell epitopes on envelope protein were identified using SEPPA 3.0 and Ellipro tools. Predicted B-cell epitopes were evaluated for allergenicity, toxicity, and antigenicity. Two consensus linear B-cell epitopes, envelope (AKVEITPNSPRAEATL) and envelope (PWHAGADTGTPHWNN) were identified using ABCpred and BepiPredtools. SEPPA 3.0 and Elliprotools predicted consensus conformational envelope (DRGWGNGCGLFGK) and envelope (AHAK) epitopes and one residue (PRO) within envelope protein as a component of B-cell epitopes. These predicted linear and conformational B-cell epitopes will help in designing peptide vaccines that will activate the humoral response. However, in-vitro and in-vivo laboratory experimental confirmations are still needed to prove the application's feasibility.

摘要

由于寨卡病毒可能与出生异常和神经紊乱有关,目前该病毒在印度的传播已成为一个公共卫生问题。鉴于其疫情爆发以及缺乏潜在药物,因此需要增强型疫苗或药物。B细胞介导的适应性免疫能够产生病原体特异性记忆,从而提供免疫保护。因此,在本研究中,从NCBI蛋白质数据库中检索了寨卡病毒的包膜蛋白。使用ABCpred和BepiPred软件在包膜蛋白上发现线性B细胞表位。使用SEPPA 3.0和Ellipro工具鉴定包膜蛋白上的构象B细胞表位。对预测的B细胞表位进行了致敏性、毒性和抗原性评估。使用ABCpred和BepiPred工具鉴定出两个共有线性B细胞表位,即包膜(AKVEITPNSPRAEATL)和包膜(PWHAGADTGTPHWNN)。SEPPA 3.0和Ellipro工具预测了共有构象包膜(DRGWGNGCGLFGK)和包膜(AHAK)表位以及包膜蛋白内的一个残基(PRO)作为B细胞表位的组成部分。这些预测的线性和构象B细胞表位将有助于设计能激活体液反应的肽疫苗。然而,仍需要进行体外和体内实验室实验确认,以证明该应用的可行性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e5a/9838338/ff89a8d85373/10989_2022_10486_Fig1_HTML.jpg

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