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核心技术专利:CN118964589B侵权必究
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MCL1 BH3 结合槽和 p53 及 INK4 蛋白家族中 rBH3 序列基序的系统发育分析。

Phylogenetic analysis of the MCL1 BH3 binding groove and rBH3 sequence motifs in the p53 and INK4 protein families.

机构信息

Department of Biochemistry and Molecular Genetics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

出版信息

PLoS One. 2023 Jan 25;18(1):e0277726. doi: 10.1371/journal.pone.0277726. eCollection 2023.


DOI:10.1371/journal.pone.0277726
PMID:36696417
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9876281/
Abstract

B-cell lymphoma 2 (Bcl-2) proteins are central, conserved regulators of apoptosis. Bcl-2 family function is regulated by binding interactions between the Bcl-2 homology 3 (BH3) motif in pro-apoptotic family members and the BH3 binding groove found in both the pro-apoptotic effector and anti-apoptotic Bcl-2 family members. A novel motif, the reverse BH3 (rBH3), has been shown to interact with the anti-apoptotic Bcl-2 homolog MCL1 (Myeloid cell leukemia 1) and have been identified in the p53 homolog p73, and the CDK4/6 (cyclin dependent kinase 4/6) inhibitor p18INK4c, (p18, cyclin-dependent kinase 4 inhibitor c). To determine the conservation of rBH3 motif, we first assessed conservation of MCL1's BH3 binding groove, where the motif binds. We then constructed neighbor-joining phylogenetic trees of the INK4 and p53 protein families and analyzed sequence conservation using sequence logos of the rBH3 locus. This showed the rBH3 motif is conserved throughout jawed vertebrates p63 and p73 sequences and in chondrichthyans, amphibians, mammals, and some reptiles in p18. Finally, a potential rBH3 motif was identified in mammalian and osteichthyan p19INK4d (p19, cyclin dependent kinase 4 inhibitor d). These findings demonstrate that the interaction between MCL1 and other cellular proteins mediated by the rBH3 motif may be conserved throughout jawed vertebrates.

摘要

B 细胞淋巴瘤 2 (Bcl-2) 蛋白是细胞凋亡的核心和保守调节剂。Bcl-2 家族的功能受凋亡前家族成员中的 Bcl-2 同源结构域 3 (BH3) 基序与凋亡前效应蛋白和抗凋亡 Bcl-2 家族成员中 BH3 结合槽之间的结合相互作用调节。一个新的基序,反向 BH3 (rBH3),已被证明与抗凋亡 Bcl-2 同源物 MCL1 (髓样细胞白血病 1) 相互作用,并在 p53 同源物 p73 和 CDK4/6 (细胞周期蛋白依赖性激酶 4/6) 抑制剂 p18INK4c (p18,细胞周期蛋白依赖性激酶 4 抑制剂 c) 中被识别。为了确定 rBH3 基序的保守性,我们首先评估了 MCL1 的 BH3 结合槽的保守性,即基序结合的部位。然后,我们构建了 INK4 和 p53 蛋白家族的邻接聚类系统发育树,并使用 rBH3 基因座的序列 logo 分析序列保守性。这表明 rBH3 基序在有颌脊椎动物 p63 和 p73 序列中以及软骨鱼类、两栖类、哺乳动物和一些爬行类的 p18 中是保守的。最后,在哺乳动物和硬骨鱼的 p19INK4d (p19,细胞周期蛋白依赖性激酶 4 抑制剂 d) 中鉴定出一个潜在的 rBH3 基序。这些发现表明,rBH3 基序介导的 MCL1 与其他细胞蛋白之间的相互作用可能在有颌脊椎动物中是保守的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/452ff03e24dc/pone.0277726.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/6a568370df89/pone.0277726.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/a6b862606733/pone.0277726.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/0b89b2f5a44d/pone.0277726.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/584ba5d7a25a/pone.0277726.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/452ff03e24dc/pone.0277726.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/6a568370df89/pone.0277726.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/a6b862606733/pone.0277726.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/0b89b2f5a44d/pone.0277726.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/584ba5d7a25a/pone.0277726.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e38/9876281/452ff03e24dc/pone.0277726.g005.jpg

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引用本文的文献

[1]
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本文引用的文献

[1]
The multiple mechanisms of MCL1 in the regulation of cell fate.

Commun Biol. 2021-9-2

[2]
Apoptosis regulation at the mitochondria membrane level.

Biochim Biophys Acta Biomembr. 2021-12-1

[3]
Myeloid cell leukemia 1 (MCL-1): Structural characteristics and application in cancer therapy.

Int J Biol Macromol. 2021-9-30

[4]
Contingency and chance erase necessity in the experimental evolution of ancestral proteins.

Elife. 2021-6-1

[5]
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.

Nucleic Acids Res. 2021-7-2

[6]
UniProt: the universal protein knowledgebase in 2021.

Nucleic Acids Res. 2021-1-8

[7]
MCL1 binds and negatively regulates the transcriptional function of tumor suppressor p73.

Cell Death Dis. 2020-11-3

[8]
Conservation analysis of core cell cycle regulators and their transcriptional behavior during limb regeneration in Ambystoma mexicanum.

Mech Dev. 2020-12

[9]
Ancient and conserved functional interplay between Bcl-2 family proteins in the mitochondrial pathway of apoptosis.

Sci Adv. 2020-9

[10]
MCL1 binding to the reverse BH3 motif of P18INK4C couples cell survival to cell proliferation.

Cell Death Dis. 2020-2-28

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