Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, 1092, Bangladesh.
Department of Biochemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.
Comput Biol Med. 2023 Mar;155:106630. doi: 10.1016/j.compbiomed.2023.106630. Epub 2023 Feb 7.
Colorectal cancer (CRC) is a severe health concern that results from a cocktail of genetic, epigenetic, and environmental abnormalities. Because it is the second most lethal malignancy in the world and the third-most common malignant tumor, but the treatment is unavailable. The goal of the current study was to use bioinformatics and systems biology techniques to determine the pharmacological mechanism underlying putative important genes and linked pathways in early-onset CRC. Computer-aided methods were used to uncover similar biological targets and signaling pathways associated with CRC, along with bioinformatics and network pharmacology techniques to assess the effects of enzastaurin on CRC. The KEGG and gene ontology (GO) pathway analysis revealed several significant pathways including in positive regulation of protein phosphorylation, negative regulation of the apoptotic process, nucleus, nucleoplasm, protein tyrosine kinase activity, PI3K-Akt signaling pathway, pathways in cancer, focal adhesion, HIF-1 signaling pathway, and Rap1 signaling pathway. Later, the hub protein module identified from the protein-protein interactions (PPIs) network, molecular docking and molecular dynamics simulation represented that enzastaurin showed strong binding interaction with two hub proteins including CASP3 (-8.6 kcal/mol), and MCL1 (-8.6 kcal/mol), which were strongly implicated in CRC management than other the five hub proteins. Moreover, the pharmacokinetic features of enzastaurin revealed that it is an effective therapeutic agent with minimal adverse effects. Enzastaurin may inhibit the potential biological targets that are thought to be responsible for the advancement of CRC and this study suggests a potential novel therapeutic target for CRC.
结直肠癌(CRC)是一种严重的健康问题,是遗传、表观遗传和环境异常的综合作用的结果。由于它是世界上第二致命的恶性肿瘤,也是第三常见的恶性肿瘤,但目前尚无有效的治疗方法。本研究的目的是利用生物信息学和系统生物学技术,确定早发性 CRC 中潜在重要基因和相关途径的药理机制。计算机辅助方法用于发现与 CRC 相关的相似生物靶标和信号通路,以及生物信息学和网络药理学技术来评估恩扎司他滨对 CRC 的影响。KEGG 和基因本体(GO)通路分析揭示了几个重要的通路,包括蛋白磷酸化的正调控、细胞凋亡过程的负调控、核、核质、蛋白酪氨酸激酶活性、PI3K-Akt 信号通路、癌症通路、黏着斑、HIF-1 信号通路和 Rap1 信号通路。随后,从蛋白质-蛋白质相互作用(PPIs)网络中识别出的枢纽蛋白模块,分子对接和分子动力学模拟表明,恩扎司他滨与两个枢纽蛋白(CASP3(-8.6 kcal/mol)和 MCL1(-8.6 kcal/mol))表现出强烈的结合相互作用,它们在 CRC 治疗中的作用比其他五个枢纽蛋白更为重要。此外,恩扎司他滨的药代动力学特征表明,它是一种有效的治疗药物,副作用最小。恩扎司他滨可能抑制潜在的生物靶标,这些靶标被认为是 CRC 进展的原因,本研究为 CRC 提供了一个潜在的新治疗靶点。