Nakanishi Shinobu, Tsutsui Taiki, Itai Nao, Denda Mitsuhiro
Shiseido Global Innovation Center, Yokohama, Japan.
Institute for Advanced Study of Mathematical Sciences, Meiji University, Tokyo, Japan.
Front Cell Dev Biol. 2023 Jan 26;11:1102585. doi: 10.3389/fcell.2023.1102585. eCollection 2023.
Olfactory receptors (ORs) are expressed in many tissues and have multiple functions. However, most studies have focused on individual ORs. Here, we aimed to conduct a comprehensive meta-transcriptome analysis of OR gene expression in human tissues by using open-source tools to search a large, publicly available genotype-tissue expression (GTEx) data set. Analysis of RNA-seq data from GTEx revealed that OR expression patterns were tissue-dependent, and we identified distinct sets of ORs that were highly expressed in 12 tissues, involving 97 ORs in total. Among them, , and were associated with skin. We further examined the roles of these ORs in skin by performing weighted gene correlation network analysis (WGCNA) and c3net analysis. WGCNA suggested that the three ORs are involved in epidermal differentiation and water-impermeable barrier homeostasis, and showed the largest gene sub-network in the c3net network. Immunocytochemical examination of human skin keratinocytes revealed a sparse expression pattern of OR10A6, suggesting that it is not uniformly distributed among all keratinocytes. An OR10A6 agonist, 3-phenylpropyl propionate (3PPP), transiently increased intracellular Ca concentration and increased cornified envelope (CE) production in cultured keratinocytes. Knock-down of OR10A6 diminished the effect of 3PPP. Overall, integration of meta-transcriptome analysis and functional analysis uncovered distinct expression patterns of ORs in various human tissues, providing basic data for future studies of the biological functions of highly expressed ORs in individual tissues. Our results further suggest that expression of OR10A6 in skin is related to epidermal differentiation, and OR10A6 may be a potential target for modulation of keratinization.
嗅觉受体(ORs)在许多组织中表达并具有多种功能。然而,大多数研究都集中在单个OR上。在这里,我们旨在通过使用开源工具搜索一个大型的、公开可用的基因型-组织表达(GTEx)数据集,对人类组织中OR基因表达进行全面的元转录组分析。对GTEx的RNA测序数据的分析表明,OR的表达模式具有组织依赖性,并且我们鉴定出了在12种组织中高表达的不同OR集合,总共涉及97个OR。其中, 、 和 与皮肤相关。我们通过进行加权基因共表达网络分析(WGCNA)和c3net分析,进一步研究了这些OR在皮肤中的作用。WGCNA表明这三个OR参与表皮分化和不透水屏障稳态,并且 在c3net网络中显示出最大的基因子网。对人类皮肤角质形成细胞的免疫细胞化学检查显示OR10A6的表达模式稀疏,表明它并非在所有角质形成细胞中均匀分布。一种OR10A6激动剂,3-苯基丙基丙酸酯(3PPP),可短暂增加培养的角质形成细胞内的钙浓度并增加角化包膜(CE)的产生。敲低OR10A6可减弱3PPP的作用。总体而言,元转录组分析和功能分析的整合揭示了OR在各种人类组织中的不同表达模式,为未来研究个别组织中高表达OR的生物学功能提供了基础数据。我们的结果进一步表明,OR10A6在皮肤中的表达与表皮分化有关,并且OR10A6可能是调节角质化的潜在靶点。