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携带胚系变异和伴有髓系恶性肿瘤的家族性血小板疾病患者的基因组图谱。

Genomic Landscape of Patients with Germline Variants and Familial Platelet Disorder with Myeloid Malignancy.

作者信息

Yu Kai, Deuitch Natalie, Merguerian Matthew, Cunningham Lea, Davis Joie, Bresciani Erica, Diemer Jamie, Andrews Elizabeth, Young Alice, Donovan Frank, Sood Raman, Craft Kathleen, Chong Shawn, Chandrasekharappa Settara, Mullikin Jim, Liu Paul P

出版信息

bioRxiv. 2023 Jan 17:2023.01.17.524290. doi: 10.1101/2023.01.17.524290.

Abstract

UNLABELLED

Germline mutations lead to familial platelet disorder with associated myeloid malignancies (FPDMM), which is characterized by thrombocytopenia and a life-long risk (35-45%) of hematological malignancies. We recently launched a longitudinal natural history study for patients with FPDMM at the NIH Clinical Center. Among 29 families with research genomic data, 28 different germline variants were detected. Besides missense mutations enriched in Runt homology domain and loss-of-function mutations distributed throughout the gene, splice-region mutations and large deletions were detected in 6 and 7 families, respectively. In 24 of 54 (44.4%) non-malignant patients, somatic mutations were detected in at least one of the clonal hematopoiesis of indeterminate potential (CHIP) genes or acute myeloid leukemia (AML) driver genes. was the most frequently mutated gene (in 9 patients), and multiple mutations were identified in 4 patients. Mutations in 7 other CHIP or AML driver genes ( , and ) were also found in more than one non-malignant patient. Moreover, three unrelated patients (one with myeloid malignancy) carried somatic mutations in , which regulates erythroid and megakaryocytic differentiation. Sequential sequencing data from 19 patients demonstrated dynamic changes of somatic mutations over time, and stable clones were more frequently found in elderly patients. In summary, there are diverse types of germline mutations and high frequency of somatic mutations related to clonal hematopoiesis in patients with FPDMM. Monitoring dynamic changes of somatic mutations prospectively will benefit patients’ clinical management and reveal mechanisms for progression to myeloid malignancies.

KEY POINTS

Comprehensive genomic profile of patients with FPDMM with germline mutations. Rising clonal hematopoiesis related secondary mutations that may lead to myeloid malignancies.

摘要

未标注

胚系突变导致伴有相关髓系恶性肿瘤的家族性血小板疾病(FPDMM),其特征为血小板减少以及血液系统恶性肿瘤的终身风险(35 - 45%)。我们最近在美国国立卫生研究院临床中心启动了一项针对FPDMM患者的纵向自然史研究。在29个有研究基因组数据的家族中,检测到28种不同的胚系变异。除了在Runt同源结构域富集的错义突变和分布于整个基因的功能丧失突变外,分别在6个和7个家族中检测到剪接区域突变和大片段缺失。在54例非恶性患者中的24例(44.4%)中,在至少一个不确定潜能的克隆性造血(CHIP)基因或急性髓系白血病(AML)驱动基因中检测到体细胞突变。 是最常发生突变的基因(9例患者),4例患者中鉴定出多个 突变。在不止一名非恶性患者中还发现了其他7个CHIP或AML驱动基因( 、 和 )的突变。此外,三名无亲缘关系的患者(一名患有髓系恶性肿瘤)在 中携带体细胞突变, 可调节红系和巨核系分化。19例患者的连续测序数据显示体细胞突变随时间动态变化,老年患者中更常发现稳定克隆。总之,FPDMM患者存在多种类型的胚系突变以及与克隆性造血相关的体细胞突变高频现象。前瞻性监测体细胞突变的动态变化将有助于患者的临床管理并揭示进展为髓系恶性肿瘤的机制。

关键点

具有胚系突变的FPDMM患者的综合基因组概况。与可能导致髓系恶性肿瘤的克隆性造血相关的继发突变增多。

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