Zhen Zhang, Dongying Fan, Yue Song, Lipeng Zhang, Jingjing Liu, Minying Liu, Yuanyuan Xu, Juan He, Shiren Song, Yi Ren, Bin Han, Chao Ma
Shanghai Collaborative Innovation Center of Agri-Seeds, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, Xinjiang, China.
Front Plant Sci. 2023 Feb 8;14:1097846. doi: 10.3389/fpls.2023.1097846. eCollection 2023.
Translation is a crucial process during plant growth and morphogenesis. In grapevine ( L.), many transcripts can be detected by RNA sequencing; however, their translational regulation is still largely unknown, and a great number of translation products have not yet been identified. Here, ribosome footprint sequencing was carried out to reveal the translational profile of RNAs in grapevine. A total of 8291 detected transcripts were divided into four parts, including the coding, untranslated regions (UTR), intron, and intergenic regions, and the 26 nt ribosome-protected fragments (RPFs) showed a 3 nt periodic distribution. Furthermore, the predicted proteins were identified and classified by GO analysis. More importantly, 7 heat shock-binding proteins were found to be involved in molecular chaperone DNA J families participating in abiotic stress responses. These 7 proteins have different expression patterns in grape tissues; one of them was significantly upregulated by heat stress according to bioinformatics research and was identified as DNA JA6. The subcellular localization results showed that VvDNA JA6 and VvHSP70 were both localized on the cell membrane. Therefore, we speculate that DNA JA6 may interact with HSP70. In addition, overexpression of and , reduced the malondialdehyde (MDA) content, improved the antioxidant enzyme activity of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD), increased the content of proline, an osmolyte substance, and affected the expression of the high-temperature marker genes and . In summary, our study proved that VvDNA JA6 and the heat shock protein VvHSP70 play a positive role in the response to heat stress. This study lays a foundation for further exploring the balance between gene expression and protein translation in grapevine under heat stress.
翻译是植物生长和形态发生过程中的一个关键过程。在葡萄(Vitis vinifera L.)中,通过RNA测序可以检测到许多转录本;然而,它们的翻译调控在很大程度上仍然未知,并且大量的翻译产物尚未被鉴定。在这里,进行了核糖体足迹测序以揭示葡萄中RNA的翻译谱。总共8291个检测到的转录本被分为四个部分,包括编码区、非翻译区(UTR)、内含子和基因间区域,并且26个核苷酸的核糖体保护片段(RPFs)呈现出3个核苷酸的周期性分布。此外,通过基因本体(GO)分析对预测的蛋白质进行了鉴定和分类。更重要的是,发现7种热休克结合蛋白参与了分子伴侣DNA J家族,参与非生物胁迫反应。这7种蛋白质在葡萄组织中具有不同的表达模式;根据生物信息学研究,其中一种在热胁迫下显著上调,并被鉴定为DNA JA6。亚细胞定位结果表明,VvDNA JA6和VvHSP70都定位于细胞膜上。因此,我们推测DNA JA6可能与HSP70相互作用。此外,VvDNA JA6和VvHSP70的过表达降低了丙二醛(MDA)含量,提高了超氧化物歧化酶(SOD)、过氧化氢酶(CAT)和过氧化物酶(POD)的抗氧化酶活性,增加了渗透调节物质脯氨酸的含量,并影响了高温标记基因HsfA2和Hsp17.6A的表达。总之,我们的研究证明VvDNA JA6和热休克蛋白VvHSP70在热胁迫响应中发挥了积极作用。本研究为进一步探索热胁迫下葡萄基因表达与蛋白质翻译之间的平衡奠定了基础。