人类肝脏有效再生与再生失败的转录组图谱

Transcriptomic landscapes of effective and failed liver regeneration in humans.

作者信息

Starlinger Patrick, Brunnthaler Laura, McCabe Chantal, Pereyra David, Santol Jonas, Steadman Jessica, Hackl Matthias, Skalicky Susanna, Hackl Hubert, Gronauer Raphael, O'Brien Daniel, Kain Renate, Hirsova Petra, Gores Gregory J, Wang Chen, Gruenberger Thomas, Smoot Rory L, Assinger Alice

机构信息

Department of Surgery, Division of Hepatobiliary and Pancreatic Surgery, Mayo Clinic, Rochester, MN, USA.

Center of Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria.

出版信息

JHEP Rep. 2023 Feb 2;5(4):100683. doi: 10.1016/j.jhepr.2023.100683. eCollection 2023 Apr.

Abstract

BACKGROUND & AIMS: Although extensive experimental evidence on the process of liver regeneration exists, in humans, validation is largely missing. However, liver regeneration is critically affected by underlying liver disease. Within this project, we aimed to systematically assess early transcriptional changes during liver regeneration in humans and further assess how these processes differ in people with dysfunctional liver regeneration.

METHODS

Blood samples of 154 patients and intraoperative tissue samples of 46 patients undergoing liver resection were collected and classified with regard to dysfunctional postoperative liver regeneration. Of those, a matched cohort of 21 patients were used for RNA sequencing. Samples were assessed for circulating cytokines, gene expression dynamics, intrahepatic neutrophil accumulation, and spatial transcriptomics.

RESULTS

Individuals with dysfunctional liver regeneration demonstrated an aggravated transcriptional inflammatory response with higher intracellular adhesion molecule-1 induction. Increased induction of this critical leukocyte adhesion molecule was associated with increased intrahepatic neutrophil accumulation and activation upon induction of liver regeneration in individuals with dysfunctional liver regeneration. Comparing baseline gene expression profiles in individuals with and without dysfunctional liver regeneration, we found that dual-specificity phosphatase 4 (DUSP4) expression, a known critical regulator of intracellular adhesion molecule-1 expression in endothelial cells, was markedly reduced in patients with dysfunctional liver regeneration. Mimicking clinical risk factors for dysfunctional liver regeneration, we found liver sinusoidal endothelial cells of two liver disease models to have significantly reduced baseline levels of DUSP4.

CONCLUSIONS

Exploring the landscape of early transcriptional changes of human liver regeneration, we observed that people with dysfunctional regeneration experience overwhelming intrahepatic inflammation. Subclinical liver disease might account for DUSP4 reduction in liver sinusoidal endothelial cells, which ultimately primes the liver for an aggravated inflammatory response.

IMPACT AND IMPLICATIONS

Using a unique human biorepository, focused on liver regeneration (LR), we explored the landscape of circulating and tissue-level alterations associated with both functional and dysfunctional LR. In contrast to experimental animal models, people with dysfunctional LR demonstrated an aggravated transcriptional inflammatory response, higher intracellular adhesion molecule-1 (ICAM-1) induction, intrahepatic neutrophil accumulation and activation upon induction of LR. Although inflammatory responses appear rapidly after liver resection, people with dysfunctional LR have exaggerated inflammatory responses that appear to be related to decreased levels of LSEC DUSP4, challenging existing concepts of post-resectional LR.

摘要

背景与目的

尽管存在大量关于肝脏再生过程的实验证据,但在人类中,这一过程在很大程度上仍缺乏验证。然而,肝脏再生会受到潜在肝脏疾病的严重影响。在本项目中,我们旨在系统评估人类肝脏再生过程中的早期转录变化,并进一步评估这些过程在肝脏再生功能失调的人群中有何不同。

方法

收集了154例患者的血液样本和46例接受肝切除术患者的术中组织样本,并根据术后肝脏再生功能失调进行分类。其中,选取了21例匹配的患者队列进行RNA测序。对样本进行循环细胞因子、基因表达动态、肝内中性粒细胞聚集和空间转录组学评估。

结果

肝脏再生功能失调的个体表现出加剧的转录炎症反应,细胞间黏附分子-1的诱导水平更高。在肝脏再生功能失调的个体中,这种关键的白细胞黏附分子诱导增加与肝内中性粒细胞聚集增加及肝脏再生诱导时的激活有关。比较肝脏再生功能正常和失调个体的基线基因表达谱,我们发现双特异性磷酸酶4(DUSP4)的表达,一种已知的内皮细胞中细胞间黏附分子-1表达的关键调节因子,在肝脏再生功能失调的患者中显著降低。模拟肝脏再生功能失调的临床风险因素,我们发现两种肝脏疾病模型的肝窦内皮细胞中DUSP4的基线水平显著降低。

结论

通过探索人类肝脏再生早期转录变化的情况,我们观察到肝脏再生功能失调的人会经历严重的肝内炎症。亚临床肝脏疾病可能是肝窦内皮细胞中DUSP4减少的原因,这最终使肝脏更容易出现加剧的炎症反应。

影响与意义

利用一个专注于肝脏再生(LR)的独特人类生物样本库,我们探索了与功能性和功能失调性LR相关的循环和组织水平变化情况。与实验动物模型不同,肝脏再生功能失调的人表现出加剧的转录炎症反应、更高的细胞间黏附分子-1(ICAM-1)诱导水平、肝内中性粒细胞聚集以及肝脏再生诱导时的激活。尽管肝切除后炎症反应迅速出现,但肝脏再生功能失调的人具有功能失调的人炎症反应更为夸张,这似乎与肝窦内皮细胞DUSP4水平降低有关,这对现有的肝切除后LR概念提出了挑战。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbbf/10025111/04d0729c8131/ga1.jpg

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