Cao Zhiyou, Zhan Haibo, Wu Weiwei, Kuang Zhihui, Mo Fengbo, Liu Xuqiang, Dai Min
Department of Orthopedics, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.
Artificial Joints Engineering and Technology Research Center of Jiangxi Province, Nanchang, Jiangxi, China.
Front Genet. 2023 Mar 10;14:1073138. doi: 10.3389/fgene.2023.1073138. eCollection 2023.
The plant homeodomain (PHD) finger refers to a protein motif that plays a key role in the recognition and translation of histone modification marks by promoting gene transcriptional activation and silencing. As an important member of the PHD family, the plant homeodomain finger protein 14 (PHF14) affects the biological behavior of cells as a regulatory factor. Several emerging studies have demonstrated that PHF14 expression is closely associated with the development of some cancers, but there is still no feasible pan-cancer analysis. Based on existing datasets from the Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO), we performed a systematic analysis of the oncogenic role of the PHF14 gene in 33 human cancers. The expression level of PHF14 was significantly different between different types of tumors and adjacent normal tissues, and the expression or genetic alteration of PHF14 gene was closely related to the prognosis of most cancer patients. Levels of cancer-associated fibroblasts (CAFs) infiltration in various cancer types were also observed to correlate with PHF14 expression. In some tumors, PFH14 may play a role in tumor immunity by regulating the expression levels of immune checkpoint genes. In addition, the results of enrichment analysis showed that the main biological activities of PHF14 were related to various signaling pathways or chromatin complex effects. In conclusion, our pan-cancer research shows that the expression level of PHF14 is closely related to the carcinogenesis and prognosis of certain tumors, which needs to be further verified by more experiments and more in-depth mechanism exploration.
植物同源结构域(PHD)指状结构是一种蛋白质基序,通过促进基因转录激活和沉默,在组蛋白修饰标记的识别和转导中起关键作用。作为PHD家族的重要成员,植物同源结构域指状蛋白14(PHF14)作为一种调节因子影响细胞的生物学行为。几项新出现的研究表明,PHF14的表达与某些癌症的发生密切相关,但目前仍缺乏可行的泛癌分析。基于癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)的现有数据集,我们对PHF14基因在33种人类癌症中的致癌作用进行了系统分析。PHF14在不同类型肿瘤与邻近正常组织中的表达水平存在显著差异,且PHF14基因的表达或基因改变与大多数癌症患者的预后密切相关。还观察到不同癌症类型中癌症相关成纤维细胞(CAF)的浸润水平与PHF14表达相关。在某些肿瘤中,PFH14可能通过调节免疫检查点基因的表达水平在肿瘤免疫中发挥作用。此外,富集分析结果表明,PHF14的主要生物学活性与各种信号通路或染色质复合体效应有关。总之,我们的泛癌研究表明,PHF14的表达水平与某些肿瘤的发生和预后密切相关,这需要通过更多实验和更深入的机制探索来进一步验证。