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无角陶赛特羊与小尾寒羊脂肪组织中可变剪接(AS)事件的比较。

Comparison of alternative splicing (AS) events in adipose tissue of polled dorset versus small tail han sheep.

作者信息

Miao Xiangyang, Luo Qingmiao, Zhao Huijing, Qin Xiaoyu

机构信息

Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.

出版信息

Heliyon. 2023 Mar 31;9(4):e14938. doi: 10.1016/j.heliyon.2023.e14938. eCollection 2023 Apr.

Abstract

BACKGROUND

During the alternative splicing (AS), the exons of primary transcripts are spliced in various arrangements, resulting in structurally and functionally distinct mRNAs and proteins. This study aimed to examine genes with AS events from Small Tail Han sheep and Dorset sheep to explore the mechanism of adipose developments.

METHODS

This study identified the genes with AS events in adipose tissues of two different sheep with next-generation sequencing. In this paper, genes with significantly different AS events were performed gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses.

RESULTS

364 genes with 411 A S events showed significant differences in adipose tissues between the two breeds; 108 genes with 120 A S events were extremely significant differences between the two breeds. We identified several novel genes that are related with adipose growth and development. The results of KEGG and GO analysis indicated that oocyte meiosis, mitogen-activated protein kinase (Wnt), mitogen-activated protein kinase (MAPK) signaling pathway, etc. Were closely related to the adipose tissue developments.

CONCLUSIONS

This paper revealed that the genes with AS events are important for adipose tissues in sheep, exploring the mechanisms of AS events associated with adipose tissue developments in sheep of different breeds.

摘要

背景

在可变剪接(AS)过程中,初级转录本的外显子以各种方式进行剪接,从而产生结构和功能不同的信使核糖核酸(mRNA)和蛋白质。本研究旨在检测小尾寒羊和多赛特羊中发生可变剪接事件的基因,以探究脂肪发育的机制。

方法

本研究利用二代测序技术鉴定了两种不同绵羊脂肪组织中发生可变剪接事件的基因。本文对可变剪接事件存在显著差异的基因进行了基因本体论(GO)和京都基因与基因组百科全书(KEGG)富集分析。

结果

364个基因发生了411次可变剪接事件,在两个品种的脂肪组织中存在显著差异;108个基因发生了120次可变剪接事件,在两个品种间存在极显著差异。我们鉴定出了几个与脂肪生长发育相关的新基因。KEGG和GO分析结果表明,卵母细胞减数分裂、丝裂原活化蛋白激酶(Wnt)、丝裂原活化蛋白激酶(MAPK)信号通路等与脂肪组织发育密切相关。

结论

本文揭示了发生可变剪接事件的基因对绵羊脂肪组织很重要,探究了不同品种绵羊中与脂肪组织发育相关的可变剪接事件的机制。

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