Center for Microbiome, Institute for Liver and Digestive Diseases, Hallym University Medical Center, Chuncheon, Korea.
Artif Cells Nanomed Biotechnol. 2023 Dec;51(1):217-232. doi: 10.1080/21691401.2023.2203734.
We comprised metabolites of gut microbiota (GM; endogenous species) and dietary plant-derived natural flavonoids (DPDNFs; exogenous species) were known as potent effectors against non-alcoholic fatty liver disease (NAFLD) network pharmacology (NP). The crucial targets against NAFLD were identified GM and DPDNFs. The protein interaction (PPI), bubble chart and networks of GM or natural products- metabolites-targets-key signalling (GNMTK) pathway were described R Package. Furthermore, the molecular docking test (MDT) to verify the affinity was performed between metabolite(s) and target(s) on a key signalling pathway. On the networks of GNMTK, , , and as key microbiota; flavonoid-rich products as key natural resources; luteolin and myricetin as key metabolites (or dietary flavonoids); AKT Serine/Threonine Kinase 1 (AKT1), CF Transmembrane conductance Regulator (CFTR) and PhosphoInositide-3-Kinase, Regulatory subunit 1 (PIK3R1) as key targets are promising components to treat NAFLD, by suppressing cyclic Adenosine MonoPhosphate (cAMP) signalling pathway. This study shows that components (microbiota, metabolites, targets and a key signalling pathway) and DPDNFs can exert combinatorial pharmacological effects against NAFLD. Overall, the integrated pharmacological approach sheds light on the relationships between GM and DPDNFs.
我们将肠道微生物群(GM;内源性物种)和膳食植物源性天然类黄酮(DPDNF;外源性物种)的代谢物组合起来,这些代谢物被认为是对抗非酒精性脂肪性肝病(NAFLD)的有效因子,采用网络药理学(NP)。确定了针对 NAFLD 的关键靶点 GM 和 DPDNFs。使用 R 包描述了 GM 或天然产物-代谢物-靶标-关键信号(GNMTK)途径的蛋白质相互作用(PPI)、气泡图和网络。此外,还对关键信号通路中的代谢物和靶标之间的亲和力进行了分子对接测试(MDT)。在 GNMTK 网络中,,, 和 是关键微生物群;富含类黄酮的产品是关键自然资源;木犀草素和杨梅素是关键代谢物(或膳食类黄酮);AKT 丝氨酸/苏氨酸激酶 1(AKT1)、CF 跨膜电导调节剂(CFTR)和磷酸肌醇-3-激酶,调节亚基 1(PIK3R1)是关键靶点,是通过抑制环腺苷酸(cAMP)信号通路治疗 NAFLD 的有前途的成分。本研究表明,成分(微生物群、代谢物、靶点和关键信号通路)和 DPDNFs 可以对 NAFLD 发挥组合药理学作用。总的来说,综合药理学方法阐明了 GM 和 DPDNFs 之间的关系。