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鸡红细胞:基因活性的表观基因组调控。

Chicken Erythrocyte: Epigenomic Regulation of Gene Activity.

机构信息

Department of Biochemistry and Medical Genetics, University of Manitoba, Winnipeg, MB R3E 0J9, Canada.

出版信息

Int J Mol Sci. 2023 May 5;24(9):8287. doi: 10.3390/ijms24098287.

Abstract

The chicken genome is one-third the size of the human genome and has a similarity of sixty percent when it comes to gene content. Harboring similar genome sequences, chickens' gene arrangement is closer to the human genomic organization than it is to rodents. Chickens have been used as model organisms to study evolution, epigenome, and diseases. The chicken nucleated erythrocyte's physiological function is to carry oxygen to the tissues and remove carbon dioxide. The erythrocyte also supports the innate immune response in protecting the chicken from pathogens. Among the highly studied aspects in the field of epigenetics are modifications of DNA, histones, and their variants. In understanding the organization of transcriptionally active chromatin, studies on the chicken nucleated erythrocyte have been important. Through the application of a variety of epigenomic approaches, we and others have determined the chromatin structure of expressed/poised genes involved in the physiological functions of the erythrocyte. As the chicken erythrocyte has a nucleus and is readily isolated from the animal, the chicken erythrocyte epigenome has been studied as a biomarker of an animal's long-term exposure to stress. In this review, epigenomic features that allow erythroid gene expression in a highly repressive chromatin background are presented.

摘要

鸡基因组的大小是人类基因组的三分之一,而在基因含量方面,两者有 60%的相似度。鸡的基因组序列相似,其基因排列与人类基因组组织比与啮齿动物更接近。鸡被用作研究进化、表观基因组和疾病的模式生物。有核红细胞的生理功能是将氧气输送到组织并去除二氧化碳。红细胞还支持先天免疫反应,使鸡免受病原体侵害。在表观遗传学领域的高度研究的方面之一是 DNA、组蛋白及其变体的修饰。在了解转录活性染色质的组织方面,对鸡有核红细胞的研究非常重要。通过应用多种表观基因组方法,我们和其他人已经确定了参与红细胞生理功能的表达/启动基因的染色质结构。由于鸡红细胞有核且易于从动物中分离出来,因此鸡红细胞的表观基因组已被用作动物长期暴露于压力的生物标志物进行研究。在这篇综述中,介绍了允许红细胞在高度抑制性染色质背景下表达的表观基因组特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62f2/10179511/453e541ec9f6/ijms-24-08287-g001.jpg

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