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用于抑制硫胺二磷酸(ThDP)依赖性酶的硫胺类似物设计:通过骨架跳跃和C2官能化的系统研究

Design of thiamine analogues for inhibition of thiamine diphosphate (ThDP)-dependent enzymes: Systematic investigation through Scaffold-Hopping and C2-Functionalisation.

作者信息

Chan Alex H Y, Ho Terence C S, Irfan Rimsha, Hamid Rawia A A, Rudge Emma S, Iqbal Amjid, Turner Alex, Hirsch Anna K H, Leeper Finian J

机构信息

Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK.

Helmholtz Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus Building E8.1, 66123 Saarbrücken, Germany; Department of Pharmacy, Saarland University, Campus Building E8.1, 66123 Saarbrücken, Germany.

出版信息

Bioorg Chem. 2023 Sep;138:106602. doi: 10.1016/j.bioorg.2023.106602. Epub 2023 May 10.

Abstract

Thiamine diphosphate (ThDP), the bioactive form of vitamin B, is an essential coenzyme needed for processes of cellular metabolism in all organisms. ThDP-dependent enzymes all require ThDP as a coenzyme for catalytic activity, although individual enzymes vary significantly in substrate preferences and biochemical reactions. A popular way to study the role of these enzymes through chemical inhibition is to use thiamine/ThDP analogues, which typically feature a neutral aromatic ring in place of the positively charged thiazolium ring of ThDP. While ThDP analogues have aided work in understanding the structural and mechanistic aspects of the enzyme family, at least two key questions regarding the ligand design strategy remain unresolved: 1) which is the best aromatic ring? and 2) how can we achieve selectivity towards a given ThDP-dependent enzyme? In this work, we synthesise derivatives of these analogues covering all central aromatic rings used in the past decade and make a head-to-head comparison of all the compounds as inhibitors of several ThDP-dependent enzymes. Thus, we establish the relationship between the nature of the central ring and the inhibitory profile of these ThDP-competitive enzyme inhibitors. We also demonstrate that introducing a C2-substituent onto the central ring to explore the unique substrate-binding pocket can further improve both potency and selectivity.

摘要

硫胺素二磷酸(ThDP)是维生素B的生物活性形式,是所有生物体细胞代谢过程所需的一种必需辅酶。尽管各个酶在底物偏好和生化反应方面存在显著差异,但依赖ThDP的酶都需要ThDP作为辅酶来发挥催化活性。通过化学抑制来研究这些酶作用的一种常用方法是使用硫胺素/ThDP类似物,这些类似物通常具有一个中性芳香环来取代ThDP带正电荷的噻唑环。虽然ThDP类似物有助于理解该酶家族的结构和作用机制,但关于配体设计策略至少仍有两个关键问题尚未解决:1)哪个是最佳芳香环?2)我们如何实现对特定ThDP依赖酶的选择性?在这项工作中,我们合成了这些类似物的衍生物,涵盖了过去十年中使用的所有中心芳香环,并对所有化合物作为几种ThDP依赖酶的抑制剂进行了直接比较。因此,我们建立了中心环的性质与这些ThDP竞争性酶抑制剂的抑制谱之间的关系。我们还证明,在中心环上引入一个C2取代基以探索独特的底物结合口袋,可以进一步提高效力和选择性。

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