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基因组测序与分析揭示了DWH-2合成的潜在高价值代谢产物。

Genome Sequencing and Analysis Reveal Potential High-Valued Metabolites Synthesized by DWH-2.

作者信息

Li Ruiying, Zheng Pu, Sun Xingyun, Dong Wenhua, Shen Ziqiang, Chen Pengcheng, Wu Dan

机构信息

The Key Laboratory of Industrial Biotechnology, School of Biotechnology, Jiangnan University, Ministry of Education, Wuxi 214122, China.

出版信息

J Fungi (Basel). 2023 Apr 28;9(5):522. doi: 10.3390/jof9050522.

Abstract

sp. is a typical opportunistic plant pathogen, which can also be classified as an endophytic fungus. In this study, the genome of a jasmonic-acid-producing DWH-2 was sequenced and analyzed to understand its application value. The results showed that the DWH-2 genome was 43.01 Mb in size with a GC content of 54.82%. A total of 11,224 coding genes were predicted, among which 4776 genes were annotated based on Gene Ontology. Furthermore, the core genes involved in the pathogenicity of the genus were determined for the first time based on pathogen-host interactions. Eight Carbohydrate-Active enzymes (CAZymes) genes related to 1,3-β-glucan synthesis were annotated based on the CAZy database and three relatively complete known biosynthetic gene clusters were identified based on the Antibiotics and Secondary Metabolites Analysis Shell database, which were associated with the synthesis of 1,3,6,8-tetrahydroxynaphthalene, dimethylcoprogen, and (R)-melanin. Moreover, eight genes associated with jasmonic acid synthesis were detected in pathways related to lipid metabolism. These findings fill the gap in the genomic data of high jasmonate-producing strains.

摘要

某菌种是一种典型的机会性植物病原体,也可归类为内生真菌。在本研究中,对一株产茉莉酸的DWH - 2菌株的基因组进行了测序和分析,以了解其应用价值。结果表明,DWH - 2基因组大小为43.01 Mb,GC含量为54.82%。共预测到11224个编码基因,其中4776个基因基于基因本体论进行了注释。此外,首次基于病原体 - 宿主相互作用确定了该属致病性相关的核心基因。基于碳水化合物活性酶(CAZy)数据库注释了8个与1,3 - β - 葡聚糖合成相关的碳水化合物活性酶(CAZymes)基因,并基于抗生素和次生代谢物分析外壳数据库鉴定了3个相对完整的已知生物合成基因簇,它们与1,3,6,8 - 四羟基萘、二甲基紫质和(R) - 黑色素的合成有关。此外,在与脂质代谢相关的途径中检测到8个与茉莉酸合成相关的基因。这些发现填补了高产茉莉酸菌株基因组数据的空白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a9e/10219381/10515726e5b5/jof-09-00522-g001.jpg

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