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应用实验和计算方法分析含β-氨基醇的水溶性 Pd(II) 配合物与 HSA 的结合机制。

Analysis of the binding mechanism for a water-soluble Pd(II) complex containing β-amino alcohols with HSA applying experimental and computational methods.

机构信息

Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran.

Department of Inorganic Chemistry, Faculty of Chemistry, Urmia University, Urmia, Iran.

出版信息

J Biomol Struct Dyn. 2024 Apr;42(7):3790-3801. doi: 10.1080/07391102.2023.2216281. Epub 2023 May 27.

Abstract

In the study ahead, the binding interactions of the [Pd (HEAC) Cl] complex with human serum albumin (HSA) protein have been assayed (pH= 7.40) utilizing computational and experimental procedures. The mentioned complex was synthesized as a water-soluble complex from {2-((2-((2-hydroxyethyl)amino)ethyl)amino) cyclohexanol} ligand = HEAC. The results of electronic absorption and circular dichroism investigations illustrated that the hydrophobicity of the Tryptophan microenvironment in HSA undergoes the changes by binding to the Pd(II) complex without substantial perturbations on the protein secondary structure. The fluorescence emission spectroscopy analysis revealed that with rising temperature, the quenching constant () in the Stern-Volmer's relation decreases; so, it can be said that the interaction process is along with a static quenching mechanism. The values of 2.88 × 10 M, and 1.26 represent the binding constant () and the number of the binding sites (n), respectively. The Job graph showed the maximum point at χ = 0.5, which means organizing a new set with 1:1 stoichiometry. Thermodynamic profile (Δ < 0, Δ < 0, and Δ < 0) has affirmed that van der Waals forces and hydrogen bonds have a basic function in the Pd(II) complex-albumin bindings. The ligand-competitive displacement studies utilizing warfarin and ibuprofen have represented that Pd(II) complex interacts with albumin by site II (subdomain IIIA). The computational molecular docking theory approved the results of the site-competitive tests; also, it indicated the existence of hydrogen bonds and van der Waals forces in Pd(II) complex-albumin interactions.Communicated by Ramaswamy H. Sarma.

摘要

在未来的研究中,利用计算和实验程序测定了 [Pd(HEAC)Cl] 配合物与人体血清白蛋白 (HSA) 蛋白的结合相互作用(pH=7.40)。所述配合物是由{2-((2-((2-羟乙基)氨基)乙基)氨基)环己醇}配体=HEAC 合成的水溶性配合物。电子吸收和圆二色性研究的结果表明,与 Pd(II) 配合物结合后,色氨酸微环境的疏水性发生变化,而蛋白质二级结构没有实质性变化。荧光发射光谱分析表明,随着温度的升高,Stern-Volmer 关系中的猝灭常数(Ksv)降低;因此,可以说相互作用过程伴随着静态猝灭机制。值为 2.88×10 M 和 1.26 分别代表结合常数(Kb)和结合位点(n)的数量。Job 图显示最大值在 χ=0.5 处,这意味着以 1:1 的化学计量比形成一个新的复合物。热力学曲线(Δ<0,Δ<0,和 Δ<0)证实了范德华力和氢键在 Pd(II) 配合物-白蛋白结合中起基本作用。利用华法林和布洛芬进行的配体竞争性置换研究表明,Pd(II) 配合物通过 II 位点(亚结构域 IIIA)与白蛋白相互作用。计算分子对接理论证实了位点竞争测试的结果;此外,它还表明 Pd(II) 配合物-白蛋白相互作用中存在氢键和范德华力。由 Ramaswamy H. Sarma 传达。

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