Advance Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Mumbai, India.
Department of Biotechnology and Bioinformatics, Sambalpur University, Burla, Odisha, India.
J Biomol Struct Dyn. 2024 May;42(8):4169-4184. doi: 10.1080/07391102.2023.2219323. Epub 2023 Jun 5.
This study emphasizes the explorations of binding of Prima-1 with two targets, p53 a tumor suppressor protein, and tyrosine kinase of epidermal growth factor receptor. investigations reveal that Prima-1 showed robust binding with both targets. Molecular docking simulations demonstrated the binding affinity of Prima-1 with p53 and tyrosine kinase was found to be -38.601 kJ/mol and -38.976 kJ/mol. In addition, the stability of Prima-1 was explored by molecular dynamics simulation. Prima-1 attains stability in the binding site of the respective protein till the simulation period is over. Moreover, the free binding energy Δ was calculated by the molecular mechanics Poisson Boltzmann surface area method. The Δ of Prima-1 with tyrosine kinase was found to be -58.585 ± 0.327 kJ/mol and with p53 it was -35.910 ± 0.335 kJ/mol. Next, cytotoxicity of the Prima-1 was evaluated using multiple cancer cell lines and the IC value were ranging between 4.5 and 30 μM. The cell death was identified by apoptosis assay. Further, the p53 and tyrosine kinase expression was monitored using immunofluorescence techniques, it was found Prima-1 induces the expression of p53 protein and mimics the level of tyrosine kinase oncogenic target. Also, reactive oxygen species (ROS) and membrane potential activity of Prima-1 was evaluated by using a lung cancer cell line. A significant decrease in intracellular ROS was observed and resulted in disruption of mitochondrial transmembrane potential. This study uncovers the underlying mechanism of Prima-1 and could be helpful to design further leads against lung cancers.Communicated by Ramaswamy H. Sarma.
本研究强调了 Prima-1 与两个靶标(肿瘤抑制蛋白 p53 和表皮生长因子受体酪氨酸激酶)结合的探索。研究表明,Prima-1 与这两个靶标均具有很强的结合能力。分子对接模拟表明,Prima-1 与 p53 和酪氨酸激酶的结合亲和力分别为-38.601 kJ/mol 和-38.976 kJ/mol。此外,还通过分子动力学模拟研究了 Prima-1 的稳定性。Prima-1 在各自蛋白质的结合部位保持稳定,直至模拟结束。此外,通过分子力学-泊松-玻尔兹曼表面面积法计算了自由结合能Δ。Prima-1 与酪氨酸激酶的Δ为-58.585±0.327 kJ/mol,与 p53 的Δ为-35.910±0.335 kJ/mol。接下来,使用多种癌细胞系评估了 Prima-1 的细胞毒性,IC 值在 4.5 和 30 μM 之间。通过凋亡测定鉴定细胞死亡。此外,还使用免疫荧光技术监测了 p53 和酪氨酸激酶的表达,结果发现 Prima-1 诱导了 p53 蛋白的表达,并模拟了酪氨酸激酶致癌靶标的水平。还评估了 Prima-1 的活性氧(ROS)和膜电位活性,使用肺癌细胞系。观察到细胞内 ROS 显著减少,导致线粒体跨膜电位破坏。本研究揭示了 Prima-1 的潜在机制,有助于设计针对肺癌的进一步先导化合物。通讯作者为 Ramaswamy H. Sarma。