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食品中古菌群落的特征:食品微生物组中被忽视的部分。

Characterization of the archaeal community in foods: The neglected part of the food microbiota.

机构信息

Department of Comparative Biomedicine and Food Science, University of Padua, Viale Universit'a 16, 35020 Legnaro, Pd, Italy.

Department of Comparative Biomedicine and Food Science, University of Padua, Viale Universit'a 16, 35020 Legnaro, Pd, Italy.

出版信息

Int J Food Microbiol. 2023 Sep 16;401:110275. doi: 10.1016/j.ijfoodmicro.2023.110275. Epub 2023 May 30.


DOI:10.1016/j.ijfoodmicro.2023.110275
PMID:37295268
Abstract

Despite the large number of studies conducted on archaea associated with extreme environments, the archaeal community composition in food products is still poorly known. Here, we investigated a new insight into exploring the archaeal community in several food matrices, with a particular focus on determining whether living archaea were present. A total of 71 samples of milk, cheese and its derived brine, honey, hamburger, clam, and trout were analyzed by high-throughput 16S rRNA sequencing. Archaea were detected in all the samples, ranging from 0.62 % of microbial communities in trout to 37.71 % in brine. Methanogens dominated 47.28 % of the archaeal communities, except for brine, which was dominated by halophilic taxa affiliated with the genus Haloquadratum (52.45 %). Clams were found to be a food with high richness and diversity of archaea and were targeted for culturing living archaea under different incubation time and temperature conditions. A subset of 16 communities derived from culture-dependent and culture-independent communities were assessed. Among the homogenates and living archaeal communities, the predominant taxa were distributed in the genera Nitrosopumilus (47.61 %) and Halorussus (78.78 %), respectively. A comparison of the 28 total taxa obtained by culture-dependent and culture-independent methods enabled their categorization into different groups, including detectable (8 out of 28), cultivable (8 out of 28), and detectable-cultivable (12 out of 28) taxa. Furthermore, using the culture method, the majority (14 out of 20) of living taxa grew at lower temperatures of 22 and 4 °C during long-term incubation, and few taxa (2 out of 20) were found at 37 °C during the initial days of incubation. Our results demonstrated the distribution of archaea in all analyzed food matrices, which opens new perspectives to expand our knowledge on archaea in foods and their beneficial and detrimental effects.

摘要

尽管已经有大量关于与极端环境相关的古菌的研究,但食品中古菌群落的组成仍知之甚少。在这里,我们深入研究了探索几种食品基质中古菌群落的新方法,特别关注是否存在活菌。共分析了 71 个牛奶、奶酪及其衍生盐水、蜂蜜、汉堡、蛤蜊和鳟鱼样本,采用高通量 16S rRNA 测序。在所有样本中均检测到古菌,其丰度范围从鳟鱼中微生物群落的 0.62%到盐水中的 37.71%。除了盐水,其中优势菌为与 Haloquadratum 属相关的嗜盐菌(52.45%)外,产甲烷菌占古菌群落的 47.28%。蛤蜊被发现是一种具有高古菌丰富度和多样性的食物,并针对在不同孵育时间和温度条件下培养活菌进行了研究。评估了来自依赖培养和非依赖培养的 16 个群落的子集。在匀浆和活菌群落中,优势类群分别分布在 Nitrosopumilus(47.61%)和 Halorussus(78.78%)属中。对依赖培养和非依赖培养方法获得的 28 个总分类群进行比较,可将其分为不同的组,包括可检测(28 个中有 8 个)、可培养(28 个中有 8 个)和可检测-可培养(28 个中有 12 个)的分类群。此外,使用培养方法,在长期孵育过程中,大多数(20 个中有 14 个)活菌在 22 和 4°C 的低温下生长,而在孵育初期,很少有菌(20 个中有 2 个)在 37°C 下生长。我们的研究结果表明,古菌分布在所有分析的食品基质中,这为我们扩展对食品中古菌及其有益和有害影响的认识开辟了新的视角。

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引用本文的文献

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Probiotics Antimicrob Proteins. 2025-8-18

[2]
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